Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3439 |
Symbol | |
ID | 6160193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3842130 |
End bp | 3842942 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641666214 |
Product | ABC transporter-related protein |
Protein accession | YP_001792462 |
Protein GI | 171060113 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0295626 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACAC CGAACATCCT TCTCAACGTC AACGGCATCG AGGTCATCTA CAACCACGTC ATCCTGGTGC TCAAGGGCGT GAGCCTGCAG GTGCCCGAAG GCCGCGTGGT GGCGCTGCTG GGCGGCAACG GCGCGGGCAA GACGACCACG CTGCGTGCGG TCAGCAACCT GCTGGCCGGC GAGCGCGGCG ACGTCACCAA GGGCAGCATC GAGCTGCGCG GCGAGCGCAT CGAGAAGCTC AGCACCTCGG ACATGGTCAA CCGCGGCGTG GTGCAGGTGA TGGAAGGCCG GCACTGCTTC GCCCACCTGT CGATCGAGGA CAACCTGATG ACCGGCGCCT ACACCCGCCG CGACGGCAAG GCCGCGGTGG CCGAGACGCT GGAGAAGGTC TACAACTACT TCCCGCGCCT GAAGACGCGC CGCACCAGCC AGGCCGCCTA CACCTCGGGC GGCGAACAGC AGATGTGCGC GATCGGCCGC GCGCTGATGG CCAACCCGAA GATGGTGCTG CTCGACGAGC CGTCGATGGG CCTGGCGCCG CAGATCGTCG AGGAGGTGTT CGAGATCGTG AAGGACCTCA ACACCAAGGA ACGCGTGACC TTCCTGCTGG CCGAGCAGAA CACCAACATC GCGCTGCGCT ACGCCGACTA CGGCTACATC CTCGAGAACG GCCGCATCGT GATGGACGGC GAGGCCCACG CGCTGCGCGA GAACGAGGAC GTCAAGGAGT TCTACCTCGG CATGGGCGGC GGCGACCGCA AGAGCTTCAA GGACGTCAAG AGCTACAAGC GGCGCAAGCG CTGGCTGGCC TAG
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Protein sequence | MSTPNILLNV NGIEVIYNHV ILVLKGVSLQ VPEGRVVALL GGNGAGKTTT LRAVSNLLAG ERGDVTKGSI ELRGERIEKL STSDMVNRGV VQVMEGRHCF AHLSIEDNLM TGAYTRRDGK AAVAETLEKV YNYFPRLKTR RTSQAAYTSG GEQQMCAIGR ALMANPKMVL LDEPSMGLAP QIVEEVFEIV KDLNTKERVT FLLAEQNTNI ALRYADYGYI LENGRIVMDG EAHALRENED VKEFYLGMGG GDRKSFKDVK SYKRRKRWLA
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