| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3420 |
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| Symbol | |
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| ID | 6162073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3804255 |
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| End bp | 3804785 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666195 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_001792443 |
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| Protein GI | 171060094 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000465918 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGATCT GGGCTCGTGG CAATGATCCT CGGCGCAGCG CTCCAGGCGG CCACGCACCG
CCGCGCGGCT TCACGCTGCT GGAACTGCTG ATCGTCGTGG CCATCATCGC GCTGGCCAGC
GCGGTGGTCT CGCTCGCGCT GCCCGACCCG GCCCACACCC GCCTCGAACA CGAAGCCGCG
CGCCTGGCCA CGCTGCTCGA GGCCGGCCGC GCGCAATCGC GTGCGCTGGG CGTGCCGGTG
GCCTGGGTGC CGGGGCCGGC GCCCGAACCG ATCGGCGACG GCGGCGATCC GGCCGACTTC
CACTTCGAAG GCCTGCCCGA GGGCAACGGC CTGCCTGTGC GCTGGCTGGC CGCACCCGGC
GACACGCCGA TCAGCGTGCA GCTGCCGGCA CAGCTGCGCG GCTTGCCGCT CGGCCCGGAG
CCCATCATCG GCGCGATGCG GCTGGTACTG CGGCTCGACC AGCAGCAGAT CACGCTCGCC
ACCGACGGGC TCGGCCCCTT CCAGGTGATC AACGATGCGC CCGCGCCCTG A
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| Protein sequence | MPIWARGNDP RRSAPGGHAP PRGFTLLELL IVVAIIALAS AVVSLALPDP AHTRLEHEAA
RLATLLEAGR AQSRALGVPV AWVPGPAPEP IGDGGDPADF HFEGLPEGNG LPVRWLAAPG
DTPISVQLPA QLRGLPLGPE PIIGAMRLVL RLDQQQITLA TDGLGPFQVI NDAPAP
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