| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3417 |
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| Symbol | |
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| ID | 6162070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3802003 |
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| End bp | 3803097 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666192 |
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| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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| Protein accession | YP_001792440 |
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| Protein GI | 171060091 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000036548 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCACCG ACACCCCGCC ATTGGTCGCT TCCACCGCCC GGCCCTCGCT GGAGCAGGCA
CTGCAACTCA AGCTGACACG TCGGGTGGCG CTGGCCGGCC GGATGGGTGA GCTCGAACCG
CTGGCGGTAC GCATCGGCCT GATCCAGAAC GCCCTGCGGC CGCGCCTGCG CCAGCCGCAG
CTGCTGGTCT TTGCGGGCGA TCACGGGCTG GCGGTCGACG TGTCGTCGCC GAGCGGCCGC
CGCACCGTCA GCGTGGTCGA CGACGTGCTC AACGGCCGGG TGCCGTTGCC GGTGTTTGCA
CATCAGCAGG GCCTGACGCT CAACGTGGTC GACTGCGGCC TGACCACGCC GCTGCGGGTG
CGCCCCGGCA TCATGGCGCG CAAGATCGCC CACGGCACGC GCAACTGCCG CGTCACGCAG
GCGATGTCGC TCGACCAGCT GCACGCGGCC ATCCGCGCCG GCATGGAGAT CGCCGACGCC
CTGCCCGGCA ACGTGCTGGG CTGCGCGGGG CTGGGCGTGG GGTCGATCGA GGCGGCCGCG
CTGGTGATCT CGCGCATCAC CGGCCTGTCG CTGCGCACCA TCCTGCATGC CGGCGACAAG
ATGCCGTCGA TGACGCTCGA ACACCTGATG GTGGTGCTGC AGGGCGCCCA GACGCGTCAC
AGCCAGGTCG AGGATCCGGT CGAGGTGCTG GCCGCGTTCG GCGGCTTCGA GACCGCGATG
ATGGTCGGCG CGATGCTCAA GGCGGCCGAA AAACGCCACC TGATCATGAT CGACGGCATC
GCGGCCTGCG CCGCGTTGCT GGTCGCCAGC CACATCGCCG GGCCGGTGGC CGACTACTGC
GTGTTCTGCC GCAGCACCGA CCATGCCGGA CTCGACGCGG TGCTGGCCGG CTTCCACGCC
ACGGCACTGC TCGCGCTGGG CATGGACAGC CTCGACGGCA CCGGCATCAC GGTCAGCTGG
CCGCTGGTCG CCGCGGCTGC GGCGCTGTTG TCCGACGTGG CCGATGGCCC GGAGGCGCCA
CCCGCCAGCG AAGAACCGGC CGAAGCGGTG CTGACCGCCG CGGTGCGCGA GTTCATCAAC
CTGCCCAACC GCTGA
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| Protein sequence | MFTDTPPLVA STARPSLEQA LQLKLTRRVA LAGRMGELEP LAVRIGLIQN ALRPRLRQPQ
LLVFAGDHGL AVDVSSPSGR RTVSVVDDVL NGRVPLPVFA HQQGLTLNVV DCGLTTPLRV
RPGIMARKIA HGTRNCRVTQ AMSLDQLHAA IRAGMEIADA LPGNVLGCAG LGVGSIEAAA
LVISRITGLS LRTILHAGDK MPSMTLEHLM VVLQGAQTRH SQVEDPVEVL AAFGGFETAM
MVGAMLKAAE KRHLIMIDGI AACAALLVAS HIAGPVADYC VFCRSTDHAG LDAVLAGFHA
TALLALGMDS LDGTGITVSW PLVAAAAALL SDVADGPEAP PASEEPAEAV LTAAVREFIN
LPNR
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