| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3403 |
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| Symbol | |
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| ID | 6162835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3785374 |
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| End bp | 3787554 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666178 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001792426 |
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| Protein GI | 171060077 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.613607 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACG CCCAGGAGAT TGCATCCATG AACAGATGGC GTGCGCCGTT GGTGGCGCTC
TTCGTCGCCA CGGTCCTGCC GTCGGTGGCC TGGGCGCAGA CCGTCATCCA GTCGATCACG
AGCAGCCAGC AAGCTGGCAG CGAGACGATC CGCATCGAGC TCAACGAGCC CCTGATCAAC
GCGCCGCGCG GTTTCGTGCT GCAGACGCCG GCGCGCATCG CGCTCGATCT GCTGGGCGTC
GTCAGCGGCA CGGTGCGGCC TTCGCAGGAG GTCAATCTCG GCAACCTGCG ATCGCTCGCG
CTGGCGCAGG CCGGCGACCG CACGCGGCTG GTGCTGAACC TGCGCCAGGC CACCCAGTAC
CGCACCGAGC AGCAGGGCAA GGTGCTGCTG GTGATCCTCG AGCCGGTGCC GGTGGCCGCC
GCGCTGGCCA CGGCGCCGAG CGAGCCGGTG CATTTTTCCG AGAGCCAGAA CAACCAGCCC
GAGCGCATCC GCGACATCGA TTTCCGCCGC GGCCGTGACG GCGCCGGTCG GGTGGTGGTC
GATCTGCCCA GCACCCAGGT CGGCGTGGAC ATCAAGCAGC AGGGCCAGAA CCTGGTGATC
GAGTTCCTGC GCTCGAACGT GCCTGAATCG CTGGTGCGCC GCCTCGACGT CACCGATTTC
GGTACGCCGG TGCATTCGAT CTCGACCACC CAGAACGGCG ACCGCGTGCG CATGGTGGTC
GAGCCGCGTG GCAGCTGGGA GCACAGCGCC TACCAGACCG ACAACCAGTT CGTGCTGGAA
GTGCGGCCGC AGAAGGTCGA TCCGCAGAAG CTGACGCAAG GCCCGGGTTT CACGGGCGAC
AAGCTGTCGC TGAACTTCCA GAGCATCGAG GTGCGCTCGC TGCTGCAGGT GATCGCCGAC
TTCACCAACT TCAACATCGT CACCAGCGAC AGCGTCACCG GCAACGTCAC GCTGCGCCTG
AAGGACGTGC CGTGGGACCA GGCGCTCGAC ATCATCATGC AGGCCAAGAG CCTGGGCGTG
AAGAAGGCCG GCAACGTGCT GTGGATCGCG CCCAAGGATG AGCTGGCGGC CAAGGAAAAG
CAGGAACTCG AGGCGCGCAA GCAGATCGCC GACCTCGAAC CGCTGCGCAC GCAGTCGTTC
CAGCTCAACT ACACCAAGGC CGAGGAAGTG GTGAAGAGCC TGACCGGCCA GCAGCAAGGC
AGCGCCGGCA CCGGCCAGGG TGGCAACGTC ACGCGCATCC TGTCGCAGCG CGGCAGCGCC
GCGTACGAGT CGCGCACCAA CCAGCTCTTC GTCTCGGACC TCCCGTCCAA GCTCGAAGAA
GTGGCGCAGA TGATCGCCAA GATCGACGTG CCGGTGCGCC AGGTGATGAT CGAGGCCCGC
ATCGTCGAGG CCGAAGACAG CTTCGGCCGC ACGCTGGGCG TCAAGCTCGG CGCGACCGAC
CTGCGCGGCA TCAACGGCGG CGTGCCGGGC TGGGGTGGCA ACAACACCCG CATCGCGCTG
GGTGGCAACT ATTCGTCGAT CGGCGACACC ACGCTGCAGC AAGCCACCGG CTCGATCTAC
GCCAACTCGC AGTTCGTCAA CCTGCCGGCC AACACCAGTT CGCTCGGCGG GGCCACGGCG
GCGACCTTTG CGCTGTCGCT GTTCGGCGCG TCGTCCAACC GTTTCCTGAA CCTCGAACTG
TCGGCGCTCG AGGCCGAAGG CAAGGGCAAG CTGGTCTCGA GCCCGCGAGT GGTCACCGCC
GACCAGGTCA AGGCGCTGAT CGAGCAGGGC ACCGAACTGC CCTATCAGAC CGGCGGCAAC
CAGCAGACCG CACCGTCGAT CGCCTTCCGC AAGGCCACGC TGAAACTCGA AGTCACGCCC
CAGATCACGC CCGAGGGCAA CATCATCATG GACGTCGACG TCAACAAGGA CAGCGTCGGC
CAGCAGACCC TGGCGGGTTT CGCGATCAAC ACCAAGCATG TCAAGACGCA GGTGCTGGTC
GAAAACGGCG GCACGGTCGT GATCGGCGGC ATCTTCGAGA CCACCGAGAC CGAATCGGTC
AACAAGGTGC CGGTGCTGGG TGACATCCCG TTCCTCGGCG TGCTGTTCCG CAACAAGACG
CGGGTGGCGA ACAAGACCGA GTTGCTGGTG TTCCTGACGC CGAAGGTGAT CACGGATCGG
AATACGGCGC TGGGGCGGTG A
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| Protein sequence | MKYAQEIASM NRWRAPLVAL FVATVLPSVA WAQTVIQSIT SSQQAGSETI RIELNEPLIN
APRGFVLQTP ARIALDLLGV VSGTVRPSQE VNLGNLRSLA LAQAGDRTRL VLNLRQATQY
RTEQQGKVLL VILEPVPVAA ALATAPSEPV HFSESQNNQP ERIRDIDFRR GRDGAGRVVV
DLPSTQVGVD IKQQGQNLVI EFLRSNVPES LVRRLDVTDF GTPVHSISTT QNGDRVRMVV
EPRGSWEHSA YQTDNQFVLE VRPQKVDPQK LTQGPGFTGD KLSLNFQSIE VRSLLQVIAD
FTNFNIVTSD SVTGNVTLRL KDVPWDQALD IIMQAKSLGV KKAGNVLWIA PKDELAAKEK
QELEARKQIA DLEPLRTQSF QLNYTKAEEV VKSLTGQQQG SAGTGQGGNV TRILSQRGSA
AYESRTNQLF VSDLPSKLEE VAQMIAKIDV PVRQVMIEAR IVEAEDSFGR TLGVKLGATD
LRGINGGVPG WGGNNTRIAL GGNYSSIGDT TLQQATGSIY ANSQFVNLPA NTSSLGGATA
ATFALSLFGA SSNRFLNLEL SALEAEGKGK LVSSPRVVTA DQVKALIEQG TELPYQTGGN
QQTAPSIAFR KATLKLEVTP QITPEGNIIM DVDVNKDSVG QQTLAGFAIN TKHVKTQVLV
ENGGTVVIGG IFETTETESV NKVPVLGDIP FLGVLFRNKT RVANKTELLV FLTPKVITDR
NTALGR
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