| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3285 |
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| Symbol | |
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| ID | 6162424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3645281 |
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| End bp | 3646414 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666060 |
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| Product | LacI family transcription regulator |
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| Protein accession | YP_001792308 |
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| Protein GI | 171059959 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00795711 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCGGC GCAAGAAGAG CGCGCGCTTC GTCGAGATCG CCGCGGCGGC CGGGGTCAGC
ACCGCCACCG TCAACCGCGT GCTCAACGAG AGCGGCAGCG TCTCCGCGCC CACGCGCGCC
AAGGTGGTGG CCGCCGCCAA GCGGCTGGGC GTGCCGCGCG TGCTGCCCGA TCCGCGCCAC
GGGCTGACAC GTTTCGACGT GATCCTGGCG CAGAGCCCGA CGCCCTACTT CCGCCGCCTC
GAGCTGGCGC TGCAGCGCAC CGCGCAGATG CTCGACGCGC GCATCGTGAT CCACCGCCAC
CGCGTCGACG CGCAGGACGA GGCCCAGGTG CTCGCCGCCA TCGGCAAGAG CAGCCAGCCC
GGCCACCGCC GCGACGGCCT GATGGTGGCG CTGCGCGACA GCCCGGCGGT GCGCCAGGCG
CTGCGCGAGC AGATCGCCAG CGGCCTGCCG GTGGTGACGC TGATGAGCCC GATCGCCGAG
GTGCCTCAAC TGCATTACGC CGGCATCGAC AACCTGAGCG CCGGGCGCAC CGCCGGGCAC
TTCATCGGCC GACTGGCTGG CGCCAGCCAG GGCGCGCCCG ACGGCGTCCA TCCCGCCGGC
CAGGTGCTGC TGCTCACCCA CAGCCTGAGC TACCGCGCCC ATGCCGAGCG CATGCTGGGC
TGCCAGCAGG TGCTGGCGCA GCGCCATCCG CAGCTGGCGG TGAGCGCGCC GGTCGAATGC
CTGGACGACG CCGACCGCTG CCACCTGGCC GTGCAGCGCG CCCTGCTCAC CGCGCGCGGC
AACGGCCGGC CGCTGGTGGC GATCTATCAC AGCGGCGCCG GCACCGGCGG TGTCGCCAGC
GCCTTGCAGC AGGCCGGCGC GGGCTTGCCG CACATCGCCT GGATCGGCCA CGAACTCAGC
GACGACCACC GCCGCTGGCT GCAGCAGGGC CTGCTCGACC TCGTGATCGA CCAGGACCCG
GACGGCCAGA TCGTCGCCGG CCTGCAGCAC CTGCTGCACG CCTGCGGCTA CGTCGAACAG
GCCGCGCCGA CCGAGCCCAA CGAGTTCCGC CTGTTCTGCG CCGAAAACCT GCGCCGCCCG
ACGCCTTATC TCGACGCCCC GCTGGCCGCG CCGCTCGATA AGATCGTGCG CTGA
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| Protein sequence | MTRRKKSARF VEIAAAAGVS TATVNRVLNE SGSVSAPTRA KVVAAAKRLG VPRVLPDPRH
GLTRFDVILA QSPTPYFRRL ELALQRTAQM LDARIVIHRH RVDAQDEAQV LAAIGKSSQP
GHRRDGLMVA LRDSPAVRQA LREQIASGLP VVTLMSPIAE VPQLHYAGID NLSAGRTAGH
FIGRLAGASQ GAPDGVHPAG QVLLLTHSLS YRAHAERMLG CQQVLAQRHP QLAVSAPVEC
LDDADRCHLA VQRALLTARG NGRPLVAIYH SGAGTGGVAS ALQQAGAGLP HIAWIGHELS
DDHRRWLQQG LLDLVIDQDP DGQIVAGLQH LLHACGYVEQ AAPTEPNEFR LFCAENLRRP
TPYLDAPLAA PLDKIVR
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