| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3270 |
|---|
| Symbol | |
|---|
| ID | 6163613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3629748 |
|---|
| End bp | 3632522 |
|---|
| Gene Length | 2775 bp |
|---|
| Protein Length | 924 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666044 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_001792293 |
|---|
| Protein GI | 171059944 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.000326284 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA GCCTCCAGAC CGATCCCGCC GCCACCGTGC AAGCCGCACC GCCGCCGATG
CGGCTTTCGG GCCTGGAGCC CGTGGAGATC GGCGAAGGCA CGCTGTTCGT CAACATCGGC
GAGCGCACCA ACGTGACGGG CTCGAAGGCC TTCGCCCGCA TGATCCTCAA CGGCCAGTTC
GAGCAGGCGC TGGCGGTGGC GCGCCAGCAG GTCGAGAACG GCGCGCAGGT GATCGACATC
AACATGGACG AGGCCATGCT CGACAGCCGC GCGGCGATGG TCCGGTTCCT GAACCTGATC
GCCGGCGAGC CCGAGATCGC GCGCGTGCCG ATCATGATCG ACTCGTCGAA GTGGGAGGTG
ATCGAGGCCG GCCTGAAGTG CATCCAGGGC AAGGGCATCG TCAACTCGAT CTCGATGAAA
GAGGGCGAGG CCGAGTTCAA GCGCCAGGCC AGGCTGGTCA AGCGCTACGG CGCGGCCGCG
GTGGTGATGG CCTTCGACGA AAAAGGCCAG GCCGACACCT ACGCCCGCAA GATCGAGATC
TGCGAACGCG CCTACCGCGT GCTGGTCGAC GAGGTGGGCT TTCCGCCCGA GGACATCATC
TTCGACCCCA ACATCTTCGC CATCGCCACC GGCATCGAGG AGCACGACAA CTACGCGGTC
GATTTCATCG AGGCGACGCG CTGGATCAAG CAGAACCTGC CCGGCGCCAA GGTGTCGGGC
GGCGTGAGCA ACGTGAGCTT CAGCTTCCGC GGCAACGAGC CGGTGCGCGA GGCGATCCAC
ACCGTCTTCC TGTACCACGC GATCCAGGCC GGCATGGACA TGGGCATCGT CAACGCCGGC
ATGGTGGGCG TGTACGACGA CCTCGAAGCC ACGCTGCGCG AGCGCGTCGA GGACGTGGTG
CTGAACCGTC GTCCGGACGC CGGCGAACGC CTGGTCGAGA TCGCCGAAAC CGCCAAGGGC
GCGGCCCGCG ACGAGAGCAG CAAGCTCGCC TGGCGCGGCA CGGCCGAGGC GCCGGTGAGC
GTCGACGACC GCCTGAGCCA CGCGCTGGTG CATGGCATCA CCGACTTCAT CAACGTCGAC
ACCGAAGAGG CCTGGCAGGC GATTTCGGCC CGTGGTGGCA GGCCCTTGCA CGTGATCGAA
GGCCCGCTGA TGGCGGGCAT GAACATCGTC GGCGACCGCT TCGGCGCGGG CAAGATGTTC
CTGCCGCAGG TCGTCAAGTC GGCCCGCGTG ATGAAGCAGG CCGTGGCCCA TCTGCTGCCC
TACATCGAGG CCGAGAAGAA GGCCCTGCAG GACGCCGGCG GCGACGTCAA GGCCAAGGGC
AAGATCGTCA TCGCCACCGT CAAGGGCGAC GTGCACGACA TCGGCAAGAA CATCGTCACC
GTCGTGCTCC AGTGCAACAA CTTCGAGGTC GTCAACATGG GCGTGATGGT GCCGTGCCAG
GACATCCTGG CGCGCGCCAA GCTCGAAGGC GCCGACATCA TCGGCCTGTC GGGCCTGATC
ACGCCGAGCC TGGAGGAGAT GCAGCACGTG GCCGCCGAGA TGCAGCGCGA CGCGTTCTTC
CGCGACAGGA AGATGCCGCT GCTGATCGGC GGCGCGACCT GCAGCCGCGT TCACACCGCC
GTCAAGATCT CGCCGCATTA CGAAGGCCCT GTCGTCTACG TGCCCGATGC CTCGCGCAGC
GTGGGCGTGT GCTCCGATCT GCTGAGCGAC GAGCGCGCGG CGCGCTTCAT CGACGAACTC
AAGATCGACT ACGACCGCGT GCGCGAGCAG CACGCCAACA AGAAGGCCAC GCCGATGGTG
ACGCTTGCCG CAGCGCGCGC CAACAAGACG CCGGTCGACT GGAGCACCTA CACGCCGCCC
AAGCCCAAGT TCATCGGCCG GCGCGTGTTC CGCAACCAGG ACCTGAGCGA GTTGGCGCAA
TGCATCGACT GGGCGCCGTT CTTCCAGACC TGGGACCTGG CGGGCAAGTT CCCCGACATC
CTGAAGGACG AGGTGGTGGG CACCGAGGCC GTGCGCGTGT TCAGCGACGG CAAACGCATG
CTGCAGCGCG CGATCGAAGG CCGCTGGCTG CAGGCCAACG GCGTGATCAG CCTGCTGCCG
GCCAACACGG TGGACGACGA CGTGATCGAG GTCTACGCCG ACGAGTCACG CGAGCAGGTG
CTGCTGCGCT GGCAGCCGCT GCGCATGCAG ACAGCGAGGC CGGTGATCGA CGGAGTGAGC
CGCCCCAATC GCAGCCTAGC CGATTTCATC GCGCCGAAAG GCCTCAAGCC CGACTACATC
GGCCTGTTCG CGGTGACGGC GGGCCTGGGC GTCGAGAAGA AGGAGCAGCA GTTCATCGAC
GACCTCGACG ACTACAGCGC CATCATGCTC AAGGCCCTGG CCGATCGCCT GGCCGAAGCG
TTTGCCGAAC ACCTGCACCA GCGCGTGCGC ACCGAGCTCT GGGGCTATGC GGCCGACGAG
TCGCTGAGCA ACGAGCAGCT GATCGCCGAG GCCTACCGCG GCATCCGGCC GGCGCCGGGT
TATCCGGCCT GCCCGGATCA CCGGGTCAAG CGCGGCATGT TCGAGGTGCT GGATGCCCAG
GACATCGGCA TGGCGCTGAC CGAGAGCCTG GCGATGACGC CGGCCGCCAG CGTGAGCGGC
TTCTACCTGG CGCACCCGGA CAGCGTCTAC TTCAACGTCG GCAAGATCGG CGAGGACCAG
TTGCAGGACT ACGCGCGGCG GCAGGCACTC GACGAGGCCG AGGCCCGGCG CGCGCTGGCG
CCGGTGCTGG GCTGA
|
|---|
| Protein sequence | MTSSLQTDPA ATVQAAPPPM RLSGLEPVEI GEGTLFVNIG ERTNVTGSKA FARMILNGQF
EQALAVARQQ VENGAQVIDI NMDEAMLDSR AAMVRFLNLI AGEPEIARVP IMIDSSKWEV
IEAGLKCIQG KGIVNSISMK EGEAEFKRQA RLVKRYGAAA VVMAFDEKGQ ADTYARKIEI
CERAYRVLVD EVGFPPEDII FDPNIFAIAT GIEEHDNYAV DFIEATRWIK QNLPGAKVSG
GVSNVSFSFR GNEPVREAIH TVFLYHAIQA GMDMGIVNAG MVGVYDDLEA TLRERVEDVV
LNRRPDAGER LVEIAETAKG AARDESSKLA WRGTAEAPVS VDDRLSHALV HGITDFINVD
TEEAWQAISA RGGRPLHVIE GPLMAGMNIV GDRFGAGKMF LPQVVKSARV MKQAVAHLLP
YIEAEKKALQ DAGGDVKAKG KIVIATVKGD VHDIGKNIVT VVLQCNNFEV VNMGVMVPCQ
DILARAKLEG ADIIGLSGLI TPSLEEMQHV AAEMQRDAFF RDRKMPLLIG GATCSRVHTA
VKISPHYEGP VVYVPDASRS VGVCSDLLSD ERAARFIDEL KIDYDRVREQ HANKKATPMV
TLAAARANKT PVDWSTYTPP KPKFIGRRVF RNQDLSELAQ CIDWAPFFQT WDLAGKFPDI
LKDEVVGTEA VRVFSDGKRM LQRAIEGRWL QANGVISLLP ANTVDDDVIE VYADESREQV
LLRWQPLRMQ TARPVIDGVS RPNRSLADFI APKGLKPDYI GLFAVTAGLG VEKKEQQFID
DLDDYSAIML KALADRLAEA FAEHLHQRVR TELWGYAADE SLSNEQLIAE AYRGIRPAPG
YPACPDHRVK RGMFEVLDAQ DIGMALTESL AMTPAASVSG FYLAHPDSVY FNVGKIGEDQ
LQDYARRQAL DEAEARRALA PVLG
|
|---|
| |