| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3264 |
|---|
| Symbol | |
|---|
| ID | 6163607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3622631 |
|---|
| End bp | 3623617 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666038 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792287 |
|---|
| Protein GI | 171059938 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.197643 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTG CAAGCTACAG GGACGGCTCG CGCGACGGCC AGCTGGTGGT CGTCTCGCGC
GATCTGAGCA TGGCGCTCTA CGCCAACGGC ATCGCCAGCC GGCTGCAACA GGTGCTCGAC
GACTGGAACT TCCTGTCACC GCAGTTGCAG GATCTGTCCC AGACCCTCAA CCACGGCAAG
GCGCGCCACG CCTTCCCGTT CGAGCCGGCG ATGTGCCTGG CGCCGCTGCC GCGGGCGCCG
CGCTGGGTGC GTGCGGCCGC TTACCTCGGC CCGCTCGAAC GCGCGTTGCG CTCGCGCGGA
GTCGAGCCGC CGACCCGGCT CAAGTCGCAG CCGCTGTTCC ACCCGTCAGC CAGCGACCTG
TTCGTCGGCG CCGCGCAGGA TGCGGTGTTC CGCAGCGCCG ACGCCGAGAT CGATTTCGAG
GCCCAGTGGG CGGTCGTGAC GGCCGACATC GCCGCCGGCG CCAGCCCGGA CCAGGCCCTC
GAAGGCGTGC GGCTGGTCGG CCTGCTCAAC GACTGGACGC TGCGCGCCAC CGCCGATGCC
GAGCTGGCAC AGGGGGGCGC CTGGGTGCAC GGCAAGCCGC CGGCCGGCTG GGCGCCGGTG
CTGGTCACGC TCGACGAGCT CGGTGGCGCC TGGCAGCGCG GACGGCTGGC GCTGCAGGTG
GAGATCCGCC ACAACGGCAA GCACTTCGCC CGGCTCGCGA CCGGCGAGGG CATGCAGTTC
CACGTCGGCC AGCTGCTCGC CACCTTGGCC CGCCAGCGTC CGTTGACGGC CGGCACGCTG
CTCAGCAGCG GCGCGATCGG CCAGGACGAC GCCGCAGCCG GCTGCGCCAG CCTGATGGCG
CAGCGCGTGG GCGCCGCTGA TGCCAAGCCC GCCCGGCCGC TGCCCGACTA CCTGAAGGAC
GGCGACGAGG TGCAGATCGA GGCCATCGGC GCCGACGGCC AGAGCGTGTT CGGTGCGATC
GCGCAGACGG TGGTCACCCG TGATTGA
|
|---|
| Protein sequence | MKLASYRDGS RDGQLVVVSR DLSMALYANG IASRLQQVLD DWNFLSPQLQ DLSQTLNHGK
ARHAFPFEPA MCLAPLPRAP RWVRAAAYLG PLERALRSRG VEPPTRLKSQ PLFHPSASDL
FVGAAQDAVF RSADAEIDFE AQWAVVTADI AAGASPDQAL EGVRLVGLLN DWTLRATADA
ELAQGGAWVH GKPPAGWAPV LVTLDELGGA WQRGRLALQV EIRHNGKHFA RLATGEGMQF
HVGQLLATLA RQRPLTAGTL LSSGAIGQDD AAAGCASLMA QRVGAADAKP ARPLPDYLKD
GDEVQIEAIG ADGQSVFGAI AQTVVTRD
|
|---|
| |