| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3255 |
|---|
| Symbol | |
|---|
| ID | 6163581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3611790 |
|---|
| End bp | 3612908 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666029 |
|---|
| Product | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
|---|
| Protein accession | YP_001792278 |
|---|
| Protein GI | 171059929 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
|---|
| TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC GCGCCGCCGT CGCCTGGAAA GCCGGCCAAC CCCTGACCAT CGAAACCGTC
GACCTCGAGG GCCCGAAGTT CGGCGAAGTG CTGGTCGAGA TCAAGGCCAC CGGCATCTGC
CACACCGACT ACTACACGCT GTCGGGCGCC GACCCGGAAG GCATCTTCCC GGCCATCCTC
GGCCATGAGG GCGCGGGCGT CGTGGTCGAC GTGGGGCCGG GCGTGACGAC GCTCAAGAAG
GGCGACCACG TCATCCCGCT CTACACGCCC GAGTGCCGGC AGTGCAAGTT CTGCCTCTCG
CGCAAGACCA ACCTGTGCCA GCTGATCCGC GGCACGCAGG GCAAGGGCCT GATGCCCGAC
GCGACCAGCC GCTTCAGCCT CGACGGCCAG CCCATCTTCC ACTACATGGG CACCAGCACC
TTCGCCAACC ACACGGTGGT GCCGGAGATC GCGCTGGCCA GGATCCGCCC CGATGCACCG
TTCGACAAGG TCTGCTACAT CGGCTGCGGC GTCACCACCG GCATCGGCGC GGTGATCTTC
ACGGCCAAGG TCGAGGCGGG TGCCAACGTG GTCGTGTTCG GCCTGGGCGG CATCGGCCTG
AACGTGATCC AGGGCGCCCG GATGGTGGGT GCCGACAAGA TCATCGGCGT GGACCTGAAC
CCGGCGCGCG AGGCGATGGC GCGCCAGTTC GGCATGACGC ACTTCATCAA CCCGAAGGAC
GTGGCCGCAG CCGGCGGCAG CCTGGTCGAC GCGATCGTGC AGCTGACCGA CGGCGGCGCC
GACTACAGCT TCGAGTGCAT CGGCAACACG AAGGTCATGC GCGACGCGCT CGAGTGCACG
CACAAGGGCT GGGGCCGCAG CATCATCATC GGCGTGGCCG AGGCGGGCGC CGAGATCAGC
ACCCGGCCGT TCCAGCTGGT GACGGGCCGC AAGTGGGAAG GCTCGGCCTT CGGCGGCGCA
CGCGGGCGCA CCGACGTGCC GAAGATCGTC GACTGGTACA TGGACGGCAA GATCAACATC
GACGACCTGA TCACCCACAA GCTCAAGCTC GAGGACATCA ACCGCGGCTT CGAGCTGATG
AAGAGCGGCG AGTCGATCCG CGCGGTGGTG GAATTCTGA
|
|---|
| Protein sequence | MKTRAAVAWK AGQPLTIETV DLEGPKFGEV LVEIKATGIC HTDYYTLSGA DPEGIFPAIL
GHEGAGVVVD VGPGVTTLKK GDHVIPLYTP ECRQCKFCLS RKTNLCQLIR GTQGKGLMPD
ATSRFSLDGQ PIFHYMGTST FANHTVVPEI ALARIRPDAP FDKVCYIGCG VTTGIGAVIF
TAKVEAGANV VVFGLGGIGL NVIQGARMVG ADKIIGVDLN PAREAMARQF GMTHFINPKD
VAAAGGSLVD AIVQLTDGGA DYSFECIGNT KVMRDALECT HKGWGRSIII GVAEAGAEIS
TRPFQLVTGR KWEGSAFGGA RGRTDVPKIV DWYMDGKINI DDLITHKLKL EDINRGFELM
KSGESIRAVV EF
|
|---|
| |