Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3243 |
Symbol | |
ID | 6160864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3596965 |
End bp | 3597999 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666017 |
Product | LacI family transcription regulator |
Protein accession | YP_001792266 |
Protein GI | 171059917 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGATG TCGCCAAGGC CGCCGGCGTG TCGCAGTCGA CGGTCTCGAT GGTGCTCAAC AACATGAGCG GCGCACGCCT GTCGGACACC ACCCGCGCCA AGGTGCTGAG CGTGGCCGTC GAGCTGGGCT ACCGCCTGCC GCGGCGCGAA AGCGCCGACA TCGCCCCCCG CAGCGCCGAG GCACCCGGCC CGCGCCGCAA CCTGATCGGC TACCTGGTCG ACGAGATCTC GACCAGCCCG CACCCGGTGG TGAGCGTCGA CGGCGCGCGC GACGCGGCCT GGGAGCACGA CTGCGTCGTC AGCGTCTGCG TGACGCGCAG CAACGCCGAC CAGGAGGCCG CCGCGATCGC CGCGCTGAAG GCCCATCCGC AGCTGCTGGG CGTCGTCTAC TCGACCATCT TCACCCGCGC CGCTACGCTG CCCGAGGCGC TGCGCGACGT GCCCACCGTG CTGCTGAACT GCCACGATGA ACACAGCAAA TTGCCCACCA TCGTGCCCGG CGAAGTGGCC GGCGGCCATG CCGGCACCGA CCACCTGATC GCGGCCGGCC ACAGCCGCAT CGGCTTCATC AACGGCGAGC CCTGGATGGA GGCCGCGAAA GACCGCCTGA AGGGCTACCG CCGCGCACTC GCCACCGCCG ACCTGCCGTT CGACCCCGCG CTGGTGCGCG ACGGCGACTG GATGAGCGGC GGTGGCTTCG ACGGCACGCT GGCGCTGATG GCGCTGCCGC GCCCGCCGAC CGCGATCTTC TGCGCCAACG ACCTGATGGC GCTGGGCGCG CTCGAAGCCC TGGCGCAGCT CGGCAAGAAG GTGCCGGCCG ACGTGTCGGT GCTGGGCTAC GACGACCAGG AAATCTCGCG CCACACCCAC CCGCCGCTGA CGACGATGGT GCTGCCCAAC TACGAGATGG GCCGCGCCGC CGTCGAGGCC CTGCTGGCCG AGGCCGCGCT GGCACCCGAG CAGCGCGGCA GCCGCCGCTC GCTGATCAAG ATCGACTGCC CGCTGGTCGA GCGCGAGACC GTCAAGCGGC GCTGA
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Protein sequence | MTDVAKAAGV SQSTVSMVLN NMSGARLSDT TRAKVLSVAV ELGYRLPRRE SADIAPRSAE APGPRRNLIG YLVDEISTSP HPVVSVDGAR DAAWEHDCVV SVCVTRSNAD QEAAAIAALK AHPQLLGVVY STIFTRAATL PEALRDVPTV LLNCHDEHSK LPTIVPGEVA GGHAGTDHLI AAGHSRIGFI NGEPWMEAAK DRLKGYRRAL ATADLPFDPA LVRDGDWMSG GGFDGTLALM ALPRPPTAIF CANDLMALGA LEALAQLGKK VPADVSVLGY DDQEISRHTH PPLTTMVLPN YEMGRAAVEA LLAEAALAPE QRGSRRSLIK IDCPLVERET VKRR
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