| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3243 |
|---|
| Symbol | |
|---|
| ID | 6160864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3596965 |
|---|
| End bp | 3597999 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666017 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_001792266 |
|---|
| Protein GI | 171059917 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG TCGCCAAGGC CGCCGGCGTG TCGCAGTCGA CGGTCTCGAT GGTGCTCAAC
AACATGAGCG GCGCACGCCT GTCGGACACC ACCCGCGCCA AGGTGCTGAG CGTGGCCGTC
GAGCTGGGCT ACCGCCTGCC GCGGCGCGAA AGCGCCGACA TCGCCCCCCG CAGCGCCGAG
GCACCCGGCC CGCGCCGCAA CCTGATCGGC TACCTGGTCG ACGAGATCTC GACCAGCCCG
CACCCGGTGG TGAGCGTCGA CGGCGCGCGC GACGCGGCCT GGGAGCACGA CTGCGTCGTC
AGCGTCTGCG TGACGCGCAG CAACGCCGAC CAGGAGGCCG CCGCGATCGC CGCGCTGAAG
GCCCATCCGC AGCTGCTGGG CGTCGTCTAC TCGACCATCT TCACCCGCGC CGCTACGCTG
CCCGAGGCGC TGCGCGACGT GCCCACCGTG CTGCTGAACT GCCACGATGA ACACAGCAAA
TTGCCCACCA TCGTGCCCGG CGAAGTGGCC GGCGGCCATG CCGGCACCGA CCACCTGATC
GCGGCCGGCC ACAGCCGCAT CGGCTTCATC AACGGCGAGC CCTGGATGGA GGCCGCGAAA
GACCGCCTGA AGGGCTACCG CCGCGCACTC GCCACCGCCG ACCTGCCGTT CGACCCCGCG
CTGGTGCGCG ACGGCGACTG GATGAGCGGC GGTGGCTTCG ACGGCACGCT GGCGCTGATG
GCGCTGCCGC GCCCGCCGAC CGCGATCTTC TGCGCCAACG ACCTGATGGC GCTGGGCGCG
CTCGAAGCCC TGGCGCAGCT CGGCAAGAAG GTGCCGGCCG ACGTGTCGGT GCTGGGCTAC
GACGACCAGG AAATCTCGCG CCACACCCAC CCGCCGCTGA CGACGATGGT GCTGCCCAAC
TACGAGATGG GCCGCGCCGC CGTCGAGGCC CTGCTGGCCG AGGCCGCGCT GGCACCCGAG
CAGCGCGGCA GCCGCCGCTC GCTGATCAAG ATCGACTGCC CGCTGGTCGA GCGCGAGACC
GTCAAGCGGC GCTGA
|
|---|
| Protein sequence | MTDVAKAAGV SQSTVSMVLN NMSGARLSDT TRAKVLSVAV ELGYRLPRRE SADIAPRSAE
APGPRRNLIG YLVDEISTSP HPVVSVDGAR DAAWEHDCVV SVCVTRSNAD QEAAAIAALK
AHPQLLGVVY STIFTRAATL PEALRDVPTV LLNCHDEHSK LPTIVPGEVA GGHAGTDHLI
AAGHSRIGFI NGEPWMEAAK DRLKGYRRAL ATADLPFDPA LVRDGDWMSG GGFDGTLALM
ALPRPPTAIF CANDLMALGA LEALAQLGKK VPADVSVLGY DDQEISRHTH PPLTTMVLPN
YEMGRAAVEA LLAEAALAPE QRGSRRSLIK IDCPLVERET VKRR
|
|---|
| |