| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3200 |
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| Symbol | |
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| ID | 6162452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3542537 |
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| End bp | 3543601 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641665974 |
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| Product | sugar ABC transporter, periplasmic sugar-binding protein |
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| Protein accession | YP_001792223 |
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| Protein GI | 171059874 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.248181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGA TGAAGACACT GATCGCCACC GTGGCCCTGG GCCTGGTCGG CCTGGCCACG
CAAGCCAGCG CGCAGGACAA GGGCGCCATC GGCATCTCGA TGCCCACCAA GTCGTCGGCA
CGCTGGATCG CCGACGGCGA CAACATGGTC AAGGTGCTCA AGGACCGCGG CTACAAGGCC
GACCTGCAGT ACGCCGACGA CGACATCCCG AACCAGCTCG CGCAGGTCGA GAACATGGTC
ACCAAGGGCG TCAAGGTGCT GGTGATCGCC TCGATCGACG GCACCACGCT GTCCAAGGTG
CTGCAGAACG CGGCCGACAA GGGCATCAAG GTCATCGCCT ACGACCGCCT GATCAAGGGC
AGCAAGAACG TCGACTACTA CGCCACCTTC GACAACTTCC AGGTCGGCGT GCTGCAGGCC
GGCTCGATCG TCGACAAGCT GGGCCTCAAG GCCGGCAAGG GCCCGTTCAA CATCGAGCTG
TTCGGTGGCA GCCCGGACGA CAACAACGCC TTCTTCTTCT ACGACGGCGC GATGAGCGTG
CTCAAGCCCT ACATCGACAG CGGCAAGCTG GTGGTGCGCA GCAAGCAGAT GGGCATGGAC
AAGGTCGGCA CGCTGCGCTG GGACGGCGCG GTGGCACAGG CGCGCATGGA CAACCTGCTG
TCGGCCTACT ACGGCAAGGA CAAGGTCGAC GCCGTGCTGT CGCCGTATGA CGGCCTGTCG
ATCGGCATCC TGTCCTCGCT CAAGGGCGTG GGCTACTGCA CCGCCAAGCA GCCGTGCCCG
GTGGTGAGCG GCCAGGACGC CGAGGTGCAG TCGGTCAAGT CGATGCTCAA GGGCGAGCAG
TACTCGACCG TCTTCAAGGA CACCCGCGAG CTGGCCAAGG TGACGGCCAA CATGGTCGAC
GCGATGCTGT CGGGCAAGAC CCCCGAGATC AACGACACCA AGACCTACAA CAACGGCGTG
AAGGTGGTGC CCTCGTACCT GTTGAAGCCG GTGAGCGTGG ACGTCTCCAA CTGGAAGCCG
GTGCTGATCG GCAGCGGCTA CTACAAGGAA TCGCAGGTCA AGTGA
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| Protein sequence | MKMMKTLIAT VALGLVGLAT QASAQDKGAI GISMPTKSSA RWIADGDNMV KVLKDRGYKA
DLQYADDDIP NQLAQVENMV TKGVKVLVIA SIDGTTLSKV LQNAADKGIK VIAYDRLIKG
SKNVDYYATF DNFQVGVLQA GSIVDKLGLK AGKGPFNIEL FGGSPDDNNA FFFYDGAMSV
LKPYIDSGKL VVRSKQMGMD KVGTLRWDGA VAQARMDNLL SAYYGKDKVD AVLSPYDGLS
IGILSSLKGV GYCTAKQPCP VVSGQDAEVQ SVKSMLKGEQ YSTVFKDTRE LAKVTANMVD
AMLSGKTPEI NDTKTYNNGV KVVPSYLLKP VSVDVSNWKP VLIGSGYYKE SQVK
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