| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3195 |
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| Symbol | |
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| ID | 6162447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3536171 |
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| End bp | 3537973 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665969 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001792218 |
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| Protein GI | 171059869 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0259315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACCT TGCGCATCGT GATTCTCGAA GAGGACACCG ACACCCCGGC GGCCTTGCGT
GCCGGCGGTC ATGGCAGCCT CGACCTGCGC TCGCTCGAGG GCCTGAGCGG CACCGACGTG
GCCTCGCTGC TGCGCGAGCG CTCGATGCCG GCACCCTTCG TCGACACCAG CACCGACAGC
CTGGGCGGCG CGCACAGCGG CTTGGGCGCG TCGTCCGACT TCGAACACGA ATTGCGCTCG
GCGCTGCAGT CGCAGGCCGG CCCCACCATG ACGCTGCTGC TGGGCAGCAG CGAGTCCGGC
CCCGACAGCG CACCGCGTGG CAGCCACGCC GCCAGCCTGC CGTTCGAGCG CCTGAACGCC
AGCCTGATGC GGGCGCTGCG GCGCCACGAA CTCGAAGCCG CGCTGGTCGA GTCCGAGACC
CGGCTGCGTC GCATCGGCCT GGCCGATCGC CTCACCGGCC TGCCCAGCCG CGAGCTGTTC
CTCGACCGCC TCGAACAGGC CGCATCGGCG GTGATGCGCG GCGGTTATGC GTTCGCCACC
CTGATGGTCG GCTTCGAGTG GCCCGCCAAC CTGACCGACG GCCTGAGCAC GAGCAGCGCC
GACAGCCTGA TCGAAACCCT GTCGCGGCGC CTGCAGCGCC TGGGCCGGCG CTCCGACAGC
TACGCGCGCA TCGGCGGCCA CACCTTTGCC GCGCTGCTGC TGGGCAACAA CAGCGTCGGC
GGCTCGACCT CGATGGCGCA CAAGATCGCC GAACAGCTGG CCCGGCCGCT GATGGTCGAC
GGCCGCTCGA TGGATCCGAT CGTCAGCGTC GGCGTGGCCC TGTGCCCGCA GCACGGCACG
GACGCGCGCA GCGTGCTGCT GCACGCCCAG GCCGCGATGG AGCAGGCCCA GCACAGCCGC
CATCCGGTCG CGGTCTACGA CGCCCGCTAC CACCGCAGCA GCCACGCCGC GCTGCACCCC
GACGCCGCCG CGATGCCGCC CGGCGACGAG GCCCTTGCAC CGCTGCTGGC CGAGGCGCTC
GAACGGCGCC AGTTCACGCT CGCCTTCCAG CCGGTGGTCG ACCTCAAGGC CGGGCCCGAC
GGCAGCCTCG ACTGGACGCT GCGCCGCCTC GAAGTCCTGG CGCGCTGGCA CAGCCCGGCG
CACGGCCACA TCGCGCCGGC GGTGTTCATC CCGGTGGCCG AACACCACGC GCTGATCGGC
CAGCTCACCG ACCAGCTGCT CGACCAGGCG CTGAGCGCCG CCACGCCGTG GCGCAGCCAG
ACGCTGGTGC CGGCGATCTC GCTCAACCTG TCGGCCCACC TGCTCGACGA CCCGGACCTG
CCCGACCGGG TGCAGTCGGC GCTGCAGGCC CACAAGTGGC CGGCCGGCGC CCTGATGCTC
GAGGTCTCGG CGTCCGCGCT GGCCCAGCCC AGCCAGCAGG CGCACGACGT GCTCGCACGC
CTGGGCCAGC TCGGCGTGCG GCTGGTGCTC GACGATTTCG GCAGCGGCCT GGGCGCCTAC
CTCGCGCTGG CCGAGCTGGG CTCGCTGGCC GAACTGAAGA TCGACCTGCG CGCGCTGCGC
CGCAACGCCG GCAGCGCGCG CAGCGACCGC GGCGCCGCGG TACTGCGATC GCTGATCACG
CTGGCGCAGG GGCTGGGCGC CGAGGTCATC GCCAAGGGCG TCGAAGACGC CGGCACCGCC
GCCTGGCTGC AGCAGCTGGG CTGCCACGCC GCGCAGGGCC ACGCCTGGAG CCGGCCGCTG
CCCGCCGAAC AGGTGCGGGC CTGGTGCACG GCGCAGGCGG CGACGCGGCA GCTGCGACAC
TGA
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| Protein sequence | MKTLRIVILE EDTDTPAALR AGGHGSLDLR SLEGLSGTDV ASLLRERSMP APFVDTSTDS
LGGAHSGLGA SSDFEHELRS ALQSQAGPTM TLLLGSSESG PDSAPRGSHA ASLPFERLNA
SLMRALRRHE LEAALVESET RLRRIGLADR LTGLPSRELF LDRLEQAASA VMRGGYAFAT
LMVGFEWPAN LTDGLSTSSA DSLIETLSRR LQRLGRRSDS YARIGGHTFA ALLLGNNSVG
GSTSMAHKIA EQLARPLMVD GRSMDPIVSV GVALCPQHGT DARSVLLHAQ AAMEQAQHSR
HPVAVYDARY HRSSHAALHP DAAAMPPGDE ALAPLLAEAL ERRQFTLAFQ PVVDLKAGPD
GSLDWTLRRL EVLARWHSPA HGHIAPAVFI PVAEHHALIG QLTDQLLDQA LSAATPWRSQ
TLVPAISLNL SAHLLDDPDL PDRVQSALQA HKWPAGALML EVSASALAQP SQQAHDVLAR
LGQLGVRLVL DDFGSGLGAY LALAELGSLA ELKIDLRALR RNAGSARSDR GAAVLRSLIT
LAQGLGAEVI AKGVEDAGTA AWLQQLGCHA AQGHAWSRPL PAEQVRAWCT AQAATRQLRH
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