| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3193 |
|---|
| Symbol | |
|---|
| ID | 6162795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3534225 |
|---|
| End bp | 3535031 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641665967 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001792216 |
|---|
| Protein GI | 171059867 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00171075 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCA CCCTCCATCC CGCATCCACG CCCACCCACC TGGCGGCCGC CGGCTCGCTG
CTGCTGATCA CCGGCGGCAG CCGTGGCATC GGTGCGGCCA CGGCGCGGCT GGCGGCGCAG
GCGGGCTGGC ACGTCGTGCT CGGCTACGCC AGCGACGCGG CTGCCGCCGA GGCGGTCGTC
GCCGAGCTGC ACGCGCTGGG CGTGATGGCC TGGGCGCTGC AGGCCGACGT GGCCGACGAG
GCGGCGGTCG GGCGGCTGTT CAGCCAGGTC GACACGCTGT GCGCCCGCAA TGCGCTGGTG
CTGCGCGGCC TGGCCAACAA CGCCGGCGTG GTCGACCGTG CCCAGCGGCT CGACGAGATG
AGCGGCGAGC GCCTGCGCCG CATGGTGGCG GTCAACCTGC TCGGCAGCCT GTACTGCGCC
CGCGAGGCGG TGCGACGCAT GAGCACGCGC CACGGCGGCA CGGGCGGGGC GATCGTCAAC
CTGTCGTCGG TGGCGGGGCG GCTCGGCGCG CCCGGCCAGT ACGTCGACTA CGCCGCCACC
AAGGGCGCGA TCGACACCTT CACGCTCGGC CTGGCGCGCG AGGTGGCGAC CGAAGGCGTG
CGCGTCAACG CGGTGCGCCC GGGCGTGATC GACACCGAGA TCCACGCCAG CGGCGGCCAG
CCCGAGCGCG CCTGGCAGCT CGCGCCGCAG ATCCCGATGC AGCGCCCCGG CGCGGCCGAC
GAGGTGGCCC AGGCGGTGGT CTGGCTGCTG TCGCCGGCGG CCTCGTACAC GACCGGTGCG
GTGCTGGATG TGACCGGCGG GCGCTGA
|
|---|
| Protein sequence | MPATLHPAST PTHLAAAGSL LLITGGSRGI GAATARLAAQ AGWHVVLGYA SDAAAAEAVV
AELHALGVMA WALQADVADE AAVGRLFSQV DTLCARNALV LRGLANNAGV VDRAQRLDEM
SGERLRRMVA VNLLGSLYCA REAVRRMSTR HGGTGGAIVN LSSVAGRLGA PGQYVDYAAT
KGAIDTFTLG LAREVATEGV RVNAVRPGVI DTEIHASGGQ PERAWQLAPQ IPMQRPGAAD
EVAQAVVWLL SPAASYTTGA VLDVTGGR
|
|---|
| |