| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3191 |
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| Symbol | |
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| ID | 6162793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3529754 |
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| End bp | 3531355 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665965 |
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| Product | cholesterol oxidase |
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| Protein accession | YP_001792214 |
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| Protein GI | 171059865 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000455037 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAGA CAGACTTCGA CGCCGTCATC ATCGGCAGCG GTTTCGGGGG TGCGGTCAGC
GCCTGCCGCC TGGCGCAGGC CGGCCAGAAG GTGCTGGTGC TCGAACGCGG CCGGCGCTGG
ACACCCGCCA ACTTCCCGCG CGAACCCGGC GACCGCTGGC TCTGGAACCA GGAGCACCCC
GAGCTGCTCA ACGGCTGGGC CGACCTGCGC ACCTTCTCCG ACATGTGGGT CGCTGCGGGC
GCCGGGGTCG GCGGCGGCTC GCTGATCTAC GCCAGCGTGT CGGTCGAGGC CAAGCCGCAG
GTGTTCGAGC AGGGCTGGCC CAGCGGCCTG CGCTACCCCG CGCTCAAGCC GTATTACGAC
CGCGTGGCCA AGATGCTCGA CATCCAGGAG CTGCCCGACA ACCAGCTCAA CCCGCGCTAC
CACCTGATGA AGGAAGCCGC CGAGGCCTGC GGCTGGGGCG ATCGTTTCCA CAAGGTGCCG
GTGGCGGTGA AGTTCGACCC GCGCTACGAC GCCAGCCTGC CCGACGCGCG CGACGACCGC
CATGCGCAGT GGGCCATCAA CCCGCAGGGC CGCCGCCAGG GCACCTGCGT GCACTGCGGC
AACTGCGACA TCGGCTGCCA GGTGCAGGCC AAGAACACGC TCGACCTCAA CTACCTGGCC
GAGGCCGAGA ACCACGGCGC CGAGATCCGC CCGCTGCACC TGGTGATGGG CATCGAGGCG
CTCGACGGCG CCGACGGCCA GCAGGGCTGG CGCGTCAGGT TCGACCAGAT CGACGACCAC
CAGCGCACGC CCGGCAGCGT GACGGCCAAG CGCGTGATCC TGGCGGCCGG CTCGATCGGC
AGCACCGAGC TGCTGCTGCG CTGCCGCGAC CAGCACAAGA CGCTGCCCAA GCTGTCGCAG
CGGCTCGGCA AGGGCTGGGC CTTCAACGGC GACTTCGTCA CGCCCACCTT CTACAAGGGC
CGCAAGGTCT CGCCCAGCCA CGGCCCGACC ATCAGCTCGG CGATCGACCT GCTCGACGGC
AAGGTCGACG GCGCACCGCT GTTCATCGAG GACGGCGGCG TGCCGAACCT GGCCGGCCAG
TTCATCCGCC AGCGCATCCG GAACCCCGGC TGGGGCAAGC TGCGCGGGCT CTGGAAGGCG
CTCGGCAAGG TCAGCGATGC CGACGATCCG CTCGATTGCA TGATGCCGTG GTTCGGCCAG
GCGATCGATG CCGCCGACGG CGAGCTCTAC CTCGGCCGGC TCTGGTACGC GCCCTGGAAG
AAGGTGCTGA AGATGAACTG GCAGTACCAG CGCTCCGAGG CGGTGGTCGA CGCGATGGTC
AAGGTGCACA AGCAGCTCTC GGCCGCGACC GGCGGCAGCG CCTTCATCCC GCCCACCTGG
ACGGTGCTGC ACAACCTCAT CACGCCGCAC CCGCTGGGCG GCTGCAACAT GGCCGACCGC
GCCGAGCAGG GTGTCGTCGA CGGCCACGGC CAGGTGTTCG GCTACCAGGG GCTGTACGTG
ATGGACGGCG CCACCATCCC GCGTGCGATC GGGCTCAACC CCTCGCGCAC CATCGCCGCT
CTGGCCGAGC GCAACGTCGA GCGCATGCTG GCCCAGGCCT GA
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| Protein sequence | MNKTDFDAVI IGSGFGGAVS ACRLAQAGQK VLVLERGRRW TPANFPREPG DRWLWNQEHP
ELLNGWADLR TFSDMWVAAG AGVGGGSLIY ASVSVEAKPQ VFEQGWPSGL RYPALKPYYD
RVAKMLDIQE LPDNQLNPRY HLMKEAAEAC GWGDRFHKVP VAVKFDPRYD ASLPDARDDR
HAQWAINPQG RRQGTCVHCG NCDIGCQVQA KNTLDLNYLA EAENHGAEIR PLHLVMGIEA
LDGADGQQGW RVRFDQIDDH QRTPGSVTAK RVILAAGSIG STELLLRCRD QHKTLPKLSQ
RLGKGWAFNG DFVTPTFYKG RKVSPSHGPT ISSAIDLLDG KVDGAPLFIE DGGVPNLAGQ
FIRQRIRNPG WGKLRGLWKA LGKVSDADDP LDCMMPWFGQ AIDAADGELY LGRLWYAPWK
KVLKMNWQYQ RSEAVVDAMV KVHKQLSAAT GGSAFIPPTW TVLHNLITPH PLGGCNMADR
AEQGVVDGHG QVFGYQGLYV MDGATIPRAI GLNPSRTIAA LAERNVERML AQA
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