Gene Lcho_3185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3185 
Symbol 
ID6162968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3520499 
End bp3521908 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content76% 
IMG OID641665959 
ProductTPR repeat-containing protein 
Protein accessionYP_001792208 
Protein GI171059859 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.000813582 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTCCAAGG CTGCCCTCAG CGAACCGAGC ATCGACGACC CGCACGGCGC AGCCGGCCCG 
ACGGCGGCCC CCCGCAGCCG CTCGCACCCG TGGCGGTCGG TGCTGGTGGC CGTGCTGCTG
GTGGCGGGAA TGGGCGTGGC GGGTTACGTC GGCCACGACG TGTTCCTCGA CCGCGCCGCG
CAGCACCACC TCGACAGCGC CCGGATGGCG CACTTTGCCG CCACGCCCGA TCTCGACCTG
GCCCGCCAGG AGTACCTGCT GACGCTGCAG GCGCGGCCCG AGCTCGGCAC GGCGCATTTC
TACCTCGGCC ACCTGCTGCT GCGCACGCGC GAATTCGACG CCGCCCGGGC GCACTTCGCG
GCGGCGCTGC GGGACCACGA GGGGCTGCCG GCCGCCTACC GGCCGGACGC CCTGCGCCTG
CTGGCCGGGC TCAATGCCGA CGGCGAGCCG GCCGCCTTGC AGCGCACGAC CGAAACCCTG
GCGGTCCGGC CCGCCGACGC CGCCAGCGCG AACGACGCGG CCAGCCTGCT CGTGATCCCG
AGCGAGCCGA CCGCGGCCGG CCGGCCGCTG GCCGCGGGCA AGGCCGGCCG GCTCGACATC
GTGCACGCGG CGGCGGCGGC CGAGCGCGCC GCGCTGGCAG CCCAGCGGCC GGCGCCGTCG
CCGGATTTCC TGTTCGCCGA CCACTCGCAG GCGATCGCCA CGCTGGCGCT GCGGGTGCCG
GCCTCGTCGG ACGTGCAGCG CGAGGTCAAC CGCCAGCTCG AAGCGCTCCA TGCCGGCGAC
GTGCAGCGGC GCCTGAGCGC GGCCAGCACG CTGGCGATCG CGCCGGACCT GAACTCGGAC
GCGGTGCCCG GCGCGGTCGA ACGGGCCGAG TCGAGCATGC TGCAACAGCG CGCCGCGCCG
GCGGTGGCCG AGGCCACGCA GGTGACGCTG GGCCTGCTGC AGTCGGCCAG CCCGCTGACG
CTGGCGCTGA ACCGCCAGGC GATCCTGCGG CTGGTCGAGG CCGCCACCGC GCTGGGCCCG
GATGCCAGCC AGGCCGCCGA ACAGGTGCGG CAGCGGGTGG TGGCCATCAC CAGCGTGCCA
CGGCCGGTGG TCTACATCCA GATTGCCAGC GAGGCCCAGC GGCCGGTCGC CCTGCAACTG
GCCAGCCGCC TGACCGAGGC CGGCTGGGTC ACGCCCGAGC TCGAGCTGGT CAACGAGCGC
GCCCCCGCGC GCACCGAGGT GCGCAGCCAG GGCACCAGCC ACCAGGGGCT GGCGCGCTGG
ATGCGACGGC TGGCCAGCGA AACCACCGGC CAGATCGCCG ATCTGAGCAA TCTGCGGCGG
GCCGCGCCGA GCGGCGACGT GTACGAGCTC TGGCTCGACC GGGATCTCTG CGTGGCACCC
GAGCGGCTGG TGCCCGGCTG CCCCGGCTGA
 
Protein sequence
MSKAALSEPS IDDPHGAAGP TAAPRSRSHP WRSVLVAVLL VAGMGVAGYV GHDVFLDRAA 
QHHLDSARMA HFAATPDLDL ARQEYLLTLQ ARPELGTAHF YLGHLLLRTR EFDAARAHFA
AALRDHEGLP AAYRPDALRL LAGLNADGEP AALQRTTETL AVRPADAASA NDAASLLVIP
SEPTAAGRPL AAGKAGRLDI VHAAAAAERA ALAAQRPAPS PDFLFADHSQ AIATLALRVP
ASSDVQREVN RQLEALHAGD VQRRLSAAST LAIAPDLNSD AVPGAVERAE SSMLQQRAAP
AVAEATQVTL GLLQSASPLT LALNRQAILR LVEAATALGP DASQAAEQVR QRVVAITSVP
RPVVYIQIAS EAQRPVALQL ASRLTEAGWV TPELELVNER APARTEVRSQ GTSHQGLARW
MRRLASETTG QIADLSNLRR AAPSGDVYEL WLDRDLCVAP ERLVPGCPG