Gene Lcho_3161 details

Gene Information

• Locus tag: Lcho_3161
• ID: 6161757
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3488860
• End bp: 3490800
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641665936
• Product: surface antigen (D15)
• Protein accession: YP_001792186
• Protein GI: 171059837
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0729] Outer membrane protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 0.288715
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGCCGGC GCTGGTTCGC GGGGCTCGGC GCAGGTCTGT GCCTGAGCCT GGGGGCCCTG 
GCGCAGGAAG CGCCCGCCGG CACCACGCCT CAGGACGGCA ACGCGGCGGG CACCTTGCTA 
GAACGCGCGG CGCCGGGTGC GGCCGGTGGC GACGACGCCG CTGCTGCGGC CGAACAGCGC 
TCGGTGACCT GGCAGCTGCG CATCGATGCG CCCGACAACC TGCGCACGCT GCTCGCGCGC 
TACCTCGACC TGGCGCGGTT CCAGCCGATG GCGGCGTCCG AGCGCATCAC CCGGGTCGAG 
CTGGCGCGCC TGCTGGCCGC GGCGCCGCAA CAGGCGCGCG GCCTGCTCGA GACCGTGGGC 
TATTTCAACG CCCGCATCAC CTCGCAGACC ACGGGCGGTG AAACGGCCAC CCCACCGGCC 
GATCCGGCGC GGCCGATCGA CCTGCAGATC ACGCTGACGG TCGAGCCCGG CCCGCAGACC 
ACGGTCGGCC AGGTGCGGCT GGAGATCGAA GGGCCGCTGT CCGAAACCGG CGACTCGGGC 
GATGCGGCAT CGCGCGCGCT GATCGAGCGC ATGCGCGCCG GCTGGACGCT GCCCGCGGGC 
CAGCCCTACA CCCAGTCCGC CTGGTCGGCC GCCAAGGCCG CGGTGCTGGT GGCCGCACGC 
GCCGAGGGCT ACGCGCTGGC CACGCTGAGC GGCAGCGTCG CGCAGGTCGA CGCCCCGGCC 
AACCGCGCCG ACCTGTTCAT GGTGCTCGAC AGCGGCCCGC TGTTCCGCTT CGGCGACCTG 
AAGTTCGAGG GCCTGAACCA CGTCCGGCCC GATGCCCTGC GGGCGATGGT GACGTTCACG 
CCCGGCGAGC CGCTGCGCGA GCAGCTGCTG CTCGACTACC AGGACCGCCT CGTCAAGTCG 
AGCCTGTTCG ACACCGTGGC GGTGCTGTTC GAGCCCGACG CCGACCAGGC CGGCGCGATG 
CCGGTGACGG TGCGGGTGCA CGAACTGGCG CTGCAGCAGG CCACGTTCGG TGTCGGTGCC 
TCCGACACCA CCGGCCCGCG CATCACGGTC GAACACCTGC ACCAGCAGGT CTTCGACCTC 
GGCTGGCAGG CCAAGAGCCG CCTGCAGCTG GGCCGCGACA CGCAGTCGGC ATCGGTCGAC 
CTGACCTCGC ATCCGCACCC CGGCCCGTAC CGCAACCTGG CCAGCGCGGC GGTCGACCGC 
ACCGAGGCCA GCGGCCTGCG CGTCACCAGC GAGCGCGTGC GGCTGGGCCG CACGCAGGAC 
ACCGAGAAGG TCGAGCGGCT GTATTTCGTC GAGTGGCAGC GCGCGCTGAC CCGCAACGTC 
GCCGACGGCA TCCTGACCGA CGACTCGTCG GCCGTCACGC TCAACTACCA CTGGATCTGG 
CGCCGGCTCG ACGACCCGAT CCTGCCCACC CGCGGCTACA GCCTGTCGGC CGAGACGGCG 
GTCGGCCGCT CGTTCGCCAG CACCGACAGC AGCGGCTTCT TCGGCCGTGC CGCCGGCCGC 
CTGACCGGCT ACTGGCCGCT CGGCCAGTCG TGGTACGGCC AGGCACGGGT GCAGCTCGGC 
CAGGTCTACG CACGCGACGC GGTGGCGGTG CCGTTCACCT TGCTGTTCCG TGCCGGCGGC 
GACGACTCGG TGCGCGGCTA CGGCTACCAG ACGCTCGGCC CGAGCTCGGC CGGCAACGGC 
AGCGCGGTCG GCGGCCGGGT GGTCGGCACC GGCAGCATCG AGCTCGCCCG GCCCTTCAGC 
CGCAACCTGC CGGCCTGGTG GTGGGGCGTG TTTCTCGACG GCGGCAACGC GGCCGCGCGC 
TGGGAGGACT TCAGCACCGT CTACGGCTAC GGCCTGGGCC TGCGCTGGCG CAGCCCGGTC 
GGGCCGCTGC GCATCGACCT GGCCTATGCC GACGAGCTGC GCAAGATGCG CCTGCATTTC 
AGCGTCGGCG TGACGTTCTG A 

 

Protein sequence

MSRRWFAGLG AGLCLSLGAL AQEAPAGTTP QDGNAAGTLL ERAAPGAAGG DDAAAAAEQR 
SVTWQLRIDA PDNLRTLLAR YLDLARFQPM AASERITRVE LARLLAAAPQ QARGLLETVG 
YFNARITSQT TGGETATPPA DPARPIDLQI TLTVEPGPQT TVGQVRLEIE GPLSETGDSG 
DAASRALIER MRAGWTLPAG QPYTQSAWSA AKAAVLVAAR AEGYALATLS GSVAQVDAPA 
NRADLFMVLD SGPLFRFGDL KFEGLNHVRP DALRAMVTFT PGEPLREQLL LDYQDRLVKS 
SLFDTVAVLF EPDADQAGAM PVTVRVHELA LQQATFGVGA SDTTGPRITV EHLHQQVFDL 
GWQAKSRLQL GRDTQSASVD LTSHPHPGPY RNLASAAVDR TEASGLRVTS ERVRLGRTQD 
TEKVERLYFV EWQRALTRNV ADGILTDDSS AVTLNYHWIW RRLDDPILPT RGYSLSAETA 
VGRSFASTDS SGFFGRAAGR LTGYWPLGQS WYGQARVQLG QVYARDAVAV PFTLLFRAGG 
DDSVRGYGYQ TLGPSSAGNG SAVGGRVVGT GSIELARPFS RNLPAWWWGV FLDGGNAAAR 
WEDFSTVYGY GLGLRWRSPV GPLRIDLAYA DELRKMRLHF SVGVTF