| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3098 |
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| Symbol | |
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| ID | 6161707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3430705 |
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| End bp | 3431943 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665873 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001792123 |
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| Protein GI | 171059774 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCACT TCACCTGGAC CGGACACGCC AGCACGGGCG CCACCGAAGG CCGGCTCGAA
GCGGCCTCGG CCTCGGCGGT GGCCGATGTG CTGCAAGGCC GCGGCATCAC GCCGTTGACG
ATCCGAGCCG CAGCGGGTGG CGGCGGCGCG CGGGGCATCG ACCTGTCGGC GCTGAAGAAG
CTCGACTGGT TCGAGCCCAA GGTGCGCACC GTCGACCTGC TGCTGTTCAG CCGCCAGCTC
AACACGCTGC TGCGCGCCGG TGTGCCGATC CTGCGCGCAC TCGCCGGGCT GCAGGAGTCG
GCCACCAACG AGAAGATGAA AAGCACGCTG GCCGAGGTGC GGCACAGCCT GGAGTCGGGC
ATCGCGCTGT CGATGAGCCT GGCGCAGCAG GGCAAGGTGT TCGATCCGTT CTACGTCGCG
CTGGTGCGGG TGGGCGAGAT GACCGGCCGG CTCGACGAAG TCTTCCTGCG GCTGTTCCAC
CACCTCGAGT TCGAGAGCGC GATGCGCCAG CAGGTCAAGG CCGCGCTGCG TTACCCGATC
TTCGTGGTCA GCGCGATGGT CGTCGCACTC GGCGTCATCA ACCTGATGGT GATCCCGGCG
TTTGCCCCCG TGTTCGAAGC CGCCGGCACC GCCCTGCCCT TGCCCACGCG CATCCTGATG
GCGAGCTCGC GTTTCACCAT CGATTGGGGC TGGCTGATGG CGATCGGCGC GGTGGCCGGC
TTCTTCGCGC TGCGCGCCTG GCGCACCACG CCCGACGGTC GGCTGCGCTG GGACACCGCG
CTGCTGAAGA TGCCGGTGGC CGGCAAGATC GTGCGCAAGG CGATGCTGGC GCGCTTTGCG
CGCAGCTTCG CGCTGTCGCT GAAAAGCGGC GTGCCGATCG CACAGGCGCT GTCGGTGGTG
GCGCAGACGG TCGACAACCA GCACATCGCC CGCAAGGTCG AGGGCATGCG TACCTCGGTC
GAGCGCGGCG ACTCGATCCT GCGTTCGGCC GCCGCCGCGG GCGTGTTCAC GCCGGTGGTG
TTGCAGATGA TCGCGGTGGG CGAGGAGACC GGCGCCGTCG ACGAACTGAT GGACGAGGTG
GCCGAGCTCT ACGGCAACGA GGTGCAGTAC GAACTCAAGA CGCTGGGCCA GCAGATCGAG
CCGATCCTGA TCGTGTTCCT GGGCGTGCTG GTGCTGATGC TGGCGCTGGG CGTGTTCCTG
CCGGTGTGGG ATCTGGGCCG CACGGCGATG GCGCATTGA
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| Protein sequence | MPHFTWTGHA STGATEGRLE AASASAVADV LQGRGITPLT IRAAAGGGGA RGIDLSALKK
LDWFEPKVRT VDLLLFSRQL NTLLRAGVPI LRALAGLQES ATNEKMKSTL AEVRHSLESG
IALSMSLAQQ GKVFDPFYVA LVRVGEMTGR LDEVFLRLFH HLEFESAMRQ QVKAALRYPI
FVVSAMVVAL GVINLMVIPA FAPVFEAAGT ALPLPTRILM ASSRFTIDWG WLMAIGAVAG
FFALRAWRTT PDGRLRWDTA LLKMPVAGKI VRKAMLARFA RSFALSLKSG VPIAQALSVV
AQTVDNQHIA RKVEGMRTSV ERGDSILRSA AAAGVFTPVV LQMIAVGEET GAVDELMDEV
AELYGNEVQY ELKTLGQQIE PILIVFLGVL VLMLALGVFL PVWDLGRTAM AH
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