Gene Lcho_3093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3093 
Symbol 
ID6162694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3425272 
End bp3425916 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content72% 
IMG OID641665868 
Productfimbrial assembly family protein 
Protein accessionYP_001792118 
Protein GI171059769 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAAC AACTCAATCT GCTCAGCGCC GACCTGCTGC GCCAGCGCCA GCGCTGGACC 
CTGCAACAAG GCCTGTGGCT GCTGCTCGCG CTGGCCGCGG CCGGCCTGAT CGGCACGCTG 
GTGCTGCAGT TCCTGACCCG CCAGGCCGCG GCCGACCTGC AGCAGCTGCA GCAGGCGATG 
GACAGCCAAC GCATCGAACT GACCACCCGG CAGGGCGAGG CGCAAGCCGG CCCGGCCGGC 
CGCATCGAGA CCGAGCTGCG CCAGCTGCGT CAGCGTGAAG CCGCCGAGCG CCGTCTGCAG 
GAGGTACTGG CCGGCGGACA GGCCGGGCGC GAAAACGGTC ACGCCGCGGT GCTGCAGGCG 
CTCGCCCGCC AGGCCGACCC TGCCGTCTGG ATCACCGGCC TGAGCCTGGG CCAGGACGGC 
GACACGATGG AGCTGCAAGG CCGCATGGCC GATGCCGCCG CGCTGCCGGC CTATCTGCGG 
CGGCTGCAGA ACGAAGCGCT GTTCCACGGC CGGCAGTTTG CGCAGCTCAG CCTGCAACGC 
GTCGAAGCCG GCGCCGAAGG CAACCTGGCC ATCAGCGCCT ACACCGAGTT CGTGCTGCGC 
ACCCAGCTCG GCCCGGCCGG GGCAACCGCG GGGCGCACAC CATGA
 
Protein sequence
MSQQLNLLSA DLLRQRQRWT LQQGLWLLLA LAAAGLIGTL VLQFLTRQAA ADLQQLQQAM 
DSQRIELTTR QGEAQAGPAG RIETELRQLR QREAAERRLQ EVLAGGQAGR ENGHAAVLQA 
LARQADPAVW ITGLSLGQDG DTMELQGRMA DAAALPAYLR RLQNEALFHG RQFAQLSLQR 
VEAGAEGNLA ISAYTEFVLR TQLGPAGATA GRTP