| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3038 |
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| Symbol | |
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| ID | 6162110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3356080 |
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| End bp | 3357684 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641665813 |
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| Product | hypothetical protein |
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| Protein accession | YP_001792063 |
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| Protein GI | 171059714 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3497] Phage tail sheath protein FI |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.000011603 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTCG TCTTCGAAGT TGCCAGCGCG CCGGTCGAAC CCGATCGGCA GCGCGCCGAC
GTGGCCTGTT TCATCGGCCA CGTGGCGCGC CGTCGCGGGG CGGCGCTGCC GGCGTCGGTG
CGGGCGCAAC TGCGGGCCGA CGGCTGGATC GACGGCGTCT GGGCCCGGCC GGCGGTGCAG
GTCGAGGCGC TCGACAACCT GCCCGTCGTG ATCGACAACT GGGCGCTGTT CGACCAGCTC
TACGCCTGGG AGCGACGCCC GCTCGCGGCC ACGGGCAGCG CCGTCTGCGC CACCTACCTG
GGCGCCGCGC TGCGCAGCTT CTTTGCCCGC GGCGGCCGGC GCGCGATCGT GATCCGGGTC
GGCGATCCGT GGCCCTTCCT CGAAGACGAC ACCCAGCGCA GCGCCCAGTT ACGCCCACGC
CTGCGCCGCC TGATCCCCGA CTTCGCCCAG ACCGTCGCGC CCAGCCGCCC GTTCGCACCG
CACGATCCGA GCACCTGGCA AGGCATCGAA CACCTCTACG GCCTGCGCGA CAACAGCTTC
GTGCTGTTCC CCGACCTGGC CGACGCCTGC GCCAGCCAGC CGGTGGCGCC GCTCGCCAGC
CCGGCCCAGA CCACGCCCGA AACCTTCGTC GAATGCAGCG TCGAGGCCGA GCCGCCGCCC
GACACCGGCC TGCGCCGCCT GCCCGCGCCG CGGCTCGACA GCGCCGGCTA CGCCGCCTGG
ATGCTGGCGG TCGGGGCCGC GCGCGGTTTC CTGGCACGGC GCCAGCGCGA GCACCTGCTG
CTGGCCTCGC TGCCGCTGCC ATGGGTCGAC ACCCGCCGCA CCGCGAGCGG CGGCGCGGCG
GTGCACGCAC AGGCCGACAT GCGCGCCTAC CTGGAGCGCA TCGGCGTGCT GCGCCCGGAC
GGCAGCCGCG CCCCGGACGA CGACACCGGC AGCGCCAGCG CCTTCGTGCA GCTGGCGTGG
CCGTGGCTGC GCAGCGCCGC CGGCACCGAT CTGCCCGAAG GCCTGGAGCC GCCCGAAGGC
GTGCTCGCCG GCCTGCTGGC CAGCAACGCC ACGCGGCGCG GCTGTTTCCG CTCGGTGGCA
GGCGACTTCT CGCTGCCGTA TCTGCGTGAC CTGTTCGATG CGGAGCCGCC GCTGTCGTGG
GGCCTGGGCG AAGGTGGCGC GGTGCAGCGG CTGGCGCGCC AGGTGTGTGT CTTCACGCCC
GGCCCGCTGG GCTGGATGCT GCAGTCGGAC GTGACCACCT CGCCGCAGGA GGCCTGGCGC
TTCGGCGGCG CCAGCCGGTT GCTGGCGAGC ATCCTGCGCA CCGCACGCGC GCAGGGCGAC
CACCTCGCCT TCGAGACCAA CGGCACGCAG ACCTGGGCCC GGCTGCGCCG CAGCCTCGAA
GACCTGCTGC TCGGCTACTG GAACGAAGGC GCCTTTGCCG GCGCCAACGC GGCGCAGGCC
TTCCAGGTGC GCTGCGACCG CAGCACCATG ACGCAGGCCG ATCTCGACGC CGGTCGGCTG
ATCGCCGAGA TCAGCGTGCG GCCGGCGCAG GCGATCGAAG TCATCACGGT GCGGCTGCAG
CTGGGCAATG CGCTCGGTGC GACCGGACTG CGGGAGGCGG CATGA
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| Protein sequence | MSLVFEVASA PVEPDRQRAD VACFIGHVAR RRGAALPASV RAQLRADGWI DGVWARPAVQ
VEALDNLPVV IDNWALFDQL YAWERRPLAA TGSAVCATYL GAALRSFFAR GGRRAIVIRV
GDPWPFLEDD TQRSAQLRPR LRRLIPDFAQ TVAPSRPFAP HDPSTWQGIE HLYGLRDNSF
VLFPDLADAC ASQPVAPLAS PAQTTPETFV ECSVEAEPPP DTGLRRLPAP RLDSAGYAAW
MLAVGAARGF LARRQREHLL LASLPLPWVD TRRTASGGAA VHAQADMRAY LERIGVLRPD
GSRAPDDDTG SASAFVQLAW PWLRSAAGTD LPEGLEPPEG VLAGLLASNA TRRGCFRSVA
GDFSLPYLRD LFDAEPPLSW GLGEGGAVQR LARQVCVFTP GPLGWMLQSD VTTSPQEAWR
FGGASRLLAS ILRTARAQGD HLAFETNGTQ TWARLRRSLE DLLLGYWNEG AFAGANAAQA
FQVRCDRSTM TQADLDAGRL IAEISVRPAQ AIEVITVRLQ LGNALGATGL REAA
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