| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3017 |
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| Symbol | |
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| ID | 6161083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3332711 |
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| End bp | 3334462 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665792 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001792042 |
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| Protein GI | 171059693 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCCTG CTCTTGCCCG GTTGCCGCTG CGCGCGGCCC TGCCGCTGGC GGTCGGCCTG
CTGCTGTTGC TGGTCGTCTG CGCCGGCTTG TGGGGGGCCT GGAAAGAAGG CCTGCAGCAG
CTCGACACGA CCGCCGAAAC GGTGCTGCGC GACGAACTCT TCCGCCTGGC GCGCCACGCC
GGCGAGCACG GCAACGTCCA TCCGGACGCC CTGGCGCAGG ACATCGGCCA GATCGCCACC
CACCCGCTGG TGCGGCAGGT GGCGCTGATC GACCACCAGG GGCGCATCAA GCAGGCCCAC
CGGCGCGCCT GGGTCGGTCG GCCGGCCGCC GAGGTGATCG CCGAGTGGCA GCCGCAGCGG
CTCGACGACA GCCTGGCGCA GCGCCGCGCC GACGTGCGCT GGGACGAGCC GACGCGGCGG
CTCAGCGGCC TGCTGTCGTA CCTGCAGCCG GTGTTCGAGG CGACGCACAC GCGCCAGCTC
GAGCCGGCGC TGGCCTACGT GCAGCTCGAC CTGCGGCGCG CCCGCGAGGA TCTGGCGCTG
GCCACCTTGC GCAACCGCCT GCCCGACCTG CTCGCGATCG GCGCCCTGCT GGCGCTGCTG
GCGGGCGGGC TGCAATGGGC GGTGGCGCGC CCGCTGCACG CCCTGGAGCG CGCGAGCCGG
CTGTGGGCCG ACGGCAACCT GGAGGCACGT GCGGCCGAAC GCGGGCCGGC CGAGATCGCC
CATCTGGCCC GGGCCTTCAA CCAGATGGTG GCGGCGCTGC AGCACAGCCG GGGCGAACTC
AGCGCCAGCA AGGAGCAGCT CTCAACCGTG CTCTATTCGA CCGGCGACGC CCTGCTGGCG
ACCGACACCG AGCGGCGTAT CACGCTGCTC AACCCGGCGG CCGAACGCCT GACCGGCTGG
CGCGAACACG AGGCGCGTGG CCGCCGGGTC GACGAGGTGT TCCGCATCGA GCACGCCCAC
ACCGGCGAGC CGGCGGAGAT CCCGGTGCAG CGCGTGCTCG ACAGCGGCAT GGTGGTCGGC
CTGGCCAACC ACACCGTGCT GGTGTCGCGC CAGGGCGAGC GCATCCACAT CGCCGACAGC
GCCGCGCCGG TGCGCGACGG CCGGGGCACG CTGCACGGCG TGGTGCTGGT GTTCCGCGAC
GTCTCCGAGG CCTACCGCCT GGAGCAGGCG CTGGCCGACA GCGAGCACCA CTACCGCACG
CTCGCCAACG CCGGCCACGC GCTGCAGTGG GTCACCGACC TGCAGGGCCG CGGCAGCTGG
TGCAACGACC CCTGGCTGGC CTTCACCGGC CAGGGCCGCG AAGACGCGCT GGCGGCGGGC
TGGCTGGGTG CCGTGCATGC CGACGAGTTC GACCAGGCCC TGCTCGGCTG GCGCGGTGCG
GTCGACGCCC ACCTCGACTT CCAGCAGATC CTGCGGCTGC GCCGCCACGA CGGCACCTGG
CGCTGGATGC ACGTCGAGGC GGTGCCGCGC CGCAGCCCGG ACGGCCGCAG CCTCGGCCAT
GTGCTGCTGG CGGTCGACAT CACCCGCGAG CACGAGATCG ACTCGCGGCT GATGGCGCAG
GTCGAAGAAC TGCGGCGCTG GCAGAGCGCC GTGCTCGGCC GCGAGGAGCG CATCGCCGAG
CTGAAGGCCG AGGTCAATAC ACTGCTGATT CGAATGGGCG AGACCCCGCG TTACGAACTG
CTCACCACAG CCGCCCCGCG GACCGAGTCC CGGAGCCTGC CCGCCTCGTT GACCGATAGC
CTTCCGACGT GA
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| Protein sequence | MNPALARLPL RAALPLAVGL LLLLVVCAGL WGAWKEGLQQ LDTTAETVLR DELFRLARHA
GEHGNVHPDA LAQDIGQIAT HPLVRQVALI DHQGRIKQAH RRAWVGRPAA EVIAEWQPQR
LDDSLAQRRA DVRWDEPTRR LSGLLSYLQP VFEATHTRQL EPALAYVQLD LRRAREDLAL
ATLRNRLPDL LAIGALLALL AGGLQWAVAR PLHALERASR LWADGNLEAR AAERGPAEIA
HLARAFNQMV AALQHSRGEL SASKEQLSTV LYSTGDALLA TDTERRITLL NPAAERLTGW
REHEARGRRV DEVFRIEHAH TGEPAEIPVQ RVLDSGMVVG LANHTVLVSR QGERIHIADS
AAPVRDGRGT LHGVVLVFRD VSEAYRLEQA LADSEHHYRT LANAGHALQW VTDLQGRGSW
CNDPWLAFTG QGREDALAAG WLGAVHADEF DQALLGWRGA VDAHLDFQQI LRLRRHDGTW
RWMHVEAVPR RSPDGRSLGH VLLAVDITRE HEIDSRLMAQ VEELRRWQSA VLGREERIAE
LKAEVNTLLI RMGETPRYEL LTTAAPRTES RSLPASLTDS LPT
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