Gene Lcho_3003 details

Gene Information

• Locus tag: Lcho_3003
• ID: 6163916
• Is gene spliced: No
• Is pseudo gene: Yes
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3310354
• End bp: 3320792
• Gene Length: 10439 bp
• GC content: 57%

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 40
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAACAA ATTTTAACTT TACGCAGGTC CAAATCAACC GTATTGCTAC GCTCGGTGCA 
CAAGGTGCTT CGCAAGGAAG CGCCATAGGT GCCTACGCAC CTGTTTATCG GTATGTGGTT 
ACGGCAGTAC TCGGCGTGCC TGAGAATAGC CCTGACGACC TGCTACGGTC TTTACTCATG 
GTAATGCCAA GAGGGGATAT TAAGAACTCC CTAACATGGC TAATAGGTGG CTATCAGGTC 
AACAAAAGCC AAGGCCTATT TTCGAAAATT ATCCGAGAAT ACAACCGACG CGAAGGCGAA 
CTACGTGGAT TCACGTTTTC CGATGAAAAA CTGCAAGAGG CGTCGAACGA AGTTGGCCGC 
TTGTTTGTCG ACCAGATAGT CGCTGCAGGC TCGCAGACAC AGGGCTTTCT CCCCTCAGTG 
CAGGAGATTG GAAACAGCGA CCTGCTAGGC GTGAGAAATA TATTATATCC AGGTAATGAA 
GTAACTGGTT CTGAACTAAA TCTTAACCAA GCTTGGCCCG GCATCGTAAT GCTCGGAAAA 
CTGAACGGTC AGTACACCGA TCGACTATTG TGGACGGACG GGCAAACATC GCCCACTTTC 
GATACCCTAC TTGACCTAAA GCAAGTACTG TTTACATGGG ACTCATTCAA AACGGCATTC 
GATCGCACAT CAGCAACACT GTTTAGTTCC GCAAGCGGAT TTGATTCAAT TCTTACGGAT 
GCAACGATCG GCCTTACGAT TAATTCAATC GGTGAAATTA TTACGGCCGG ATTCGATCCT 
CGAGCATGGT TTAAGCAGTT GATTGTGTCT CAAAATCAAA AAGCGGGAAT CGTTTTGTCG 
CAGGTCTCTG ATATTGGTAG CGCGACAATC CTCGATATGG TATCTGGGGC CACAAAGGGA 
CAGACATTGA TTGGCACAAC CACCGACGCC AACTTCAAGA CGCAATCCCA AGAGTTCTTT 
GCTGGCTACA CGCTGACCCA ACTTCAGGCG TTGGCCGTCA AGTTACTGCC AGCCAACGCG 
GCAGCCTTGG CATCGCGTGC TGCGACTGAC GTCAATGTTC GCGCTGCTTT GGGCGCACTA 
TCTGTCATTA GTGTGGCTGT CGACAGCACA GTTGCACAGC AGTTCAGCCT GTATGACGCC 
ATTGCAGGCA CTGGCAACAT AACTGACGCA TGGATACGTG ACCGCGCTGC GATGACTGAC 
TGGCTCGTCG TGCGCAACAA AGCCGGCACC ACGGGAGCGA TTACCGGCGG TATGTCTGGC 
CGCACCATTA CTGAATCGAC CAACTACGAA GTCCGGAAGA ATGACGGCAC ACTTGGTACT 
CGAATCTTGG TCGGCACCGC AGATCTGATA AACCTGCGAG TACAAATCCT CTTCGGTGGT 
GATGCTGCAG ATTCAATTTC CGGTTCCGGT CGCAATGACC ACCTTTATGG AGGTGCTGGC 
AATGACACTC TGAGTGGCCA AGGTGGCAAT GATTATCTCG AAGGCAATTC CGGTTCAAAC 
GTCTTGGACG GCGGTGATGG CAACGACAAC CTTCTCGGTG GTATCGACAA CGACACCCTC 
GACGGCGGCT TGGGTAATGA CACGCTCAAC GGTGGCCTTG GACTCGACAC CTACAAATTT 
GTCACTTCAG CGGGAGAATT TGGCAAGGAT GTGATCGTTG ACGCAGACGG CTCGGGTTCC 
ATCACGATGG ACGGCGTGCT CCTGAACGGT GCCAGCACCA CCAAGGTCGG CGAAGGCGTT 
TGGCGTAGCG CGGATCGCCG ATATACCTAC GCGCTCGTCA GTGCCAGTGC AACGCAAAAA 
GACCTGATCA TTAGCATTTC AGACCGCAGC GACCGCATCA TCGTGCGCGA TTGGACGGTG 
AATCGCAGCG TTGGCATCAC GTTGTCAGAC GTGGCTGCGA CGCAGACTGG TACAAGAATT 
TTTCCCGGAG AATTCATCAA GCAAAAAAGT CCGACGGACA CGACCAAATA CGCTTTTGAC 
GCCGATGGGA ACTATGTTTC TGCGGGGCCG CTGGCAGGTT CGGCTGATTT GATCACGGCT 
TCTGCTGGTG CCGACATCGT TCTGGGACTT GCCGGTGATG ATGCATTGCT AGGTCGCGCT 
GGCGATGACT GGATCGATGG GGGAATCGGT AACGACGTGC TGATGGGTGG GGTCGGCGCT 
GACAACCTTT TCGGCGGTTC CGGAACCGAC ATCATTTATG GCTCTAGTTC GGGTGTGCTC 
ACATATCCGA TAGCGACAAA CTTCGTGTCG CCAGTACAGT CCTATCCGAA CCTTCTTGCG 
TCTGGATTCA ATTGGTTGAT CCAGTCTCCC GCACTGGACA GTGAAGGGTT TTACGGCGCC 
CTATTGACAA CCACGATCCA GCGTGACCAG CAGCCCAGTG ATGCCGGCAA CTTCATAGAT 
GCCGGTACGG GTAATGATTT TGTCTTGGCA GGTACTGGCA GTGATGTCGT GTTGGGTGGC 
GAAGGCAACG ACGAAATCAC TGGCATGGGA GGCTCAGACA TTCTGCTGGG TGGCGCGGAT 
GTCGACCGTA TTTGGGGCGA TGGCCCGGTC GTTCCGGTAA CCGAATCAGT AGCAGCGACT 
GCTGGGACCG TGCACGGCGC CGATGTCATC GACGGCGGGC TCGGGAACGA CATATTGATG 
GGACAGGGTG GCGATGACGT TATCTATGGG GGCGAAGGCA ACGACAAGAT CTGGGGTGAT 
GATCGTAGCC TTGCTTCGAC ACCAGAAGAG TTTGACGGTC AAGACTACCT TGAGGGCGGT 
TCTGGCGACG ATCAGTTGAA TGGCGGTGGT GGAAGCGATG TTCTGATTGG CGGGGCCGGC 
GGCGATGTCT TGAATGGTGG AAAAGGCAAT GACACTTATG TTTTGAGAGT GGGGGATGGC 
GGCCTGACGG GACAAGGCAC GGCCGAGTCG ATCTACGATG AAGCGGGCAT CGAGAATATA 
GTTTTTGAAA ACTTCGTGAT CAACAGCGTT GCCACATCGC CCAATTTTTC AATCAATGGC 
AATGCCCTGG TTATCAACAT CGGAACTGAT ATTTTCGCAG TCGATGGCGG CATGTCAGGG 
CGATTCAAGT ATTCGATTGG TGGCAACCAG TCACGTTCAG CCGGTGAACT CATCGGCAGT 
TACAGCACAC GGTTTGATGG CCTCAGTTCT GTAGATGCTT CAGGTCATTT GATGTGGTAC 
GGCGGCGTGT GGGGTGACAT TATCGGTTCG CAGACTGCTC ATGCTGTTCT TTCAGGTGGC 
CGCGGCGACG ACGAGATTAC CATTGGGGCG GGCGATACGA CCGTCCTGTA CAGCTTGGGC 
GACGGCGCCG ATACGGTAAG AGGAGGCGGT TCGGCCATAG ACGAGAACGG ACAATCAGCG 
CCAAACCGAA TCCGGTTTGG CGAAGGAATA TCTGCTGACG ATATCAGTGT CAGCCTGAAT 
GGAGGCTTGT CTGTTCAGGT GGGAAGCGAA TCGGCAAATC GCCTAACTCT GACAGGCTAC 
GACATTGCCA ATTCCACTAA CTCACCAGTA ACTCGCTTCG AATTTGCGGA TGGCGGAATA 
CTGACCTACG AAGAACTGCT CGCGCGCGGG GTCGCCGGCA GTACTCTGGA TGACATCATC 
GTTGGCACGG CGGTGGCCGA CCTCATACGT GCGAATAATG GCAACGACCA TGTCTCCGGT 
CAAGCCGGCA ACGATACTCT CATAGGCGGC TGGGGCAACG ACAGTCTGGC CGGCGGCTGG 
GGCAGCGACC TATATTCGGG CGGTTTCAAG TCCCAAGTGC AACACCCGGG TCAATGAATA 
GAAGAATCGG GTTGATCGAG CTTTTTCAAC ACGGCTGCGA ATACCTCCAG GGGCGAATGG 
AAGTTGTGCG TCGCGCGGGG CCGGTTGTTG AGGCTGTCAG CAATGGCATC AAGCGCATCC 
TGCGTATGGA CCGACAGATC GGTGCCCTTG GGCAGGTACT GGCGCAGCAG CCCGTTGGTG 
TTCTCGCAGG TGCCGCGCTG CCAGGGGCTG TGCGGATCAC AGAAGTAGAC CTTCACGCCG 
GTCGCGGCGG CCAACGCCTG GTGGCGGCTC ATCTCCCGGC CCTGGTCGTA GGTCAGACTC 
TGGCGCATCG GCGCGGTGAT CGAATTGAGC TTGGCAGCAA AGCCCGCCAG CGCTGAAGCG 
GCCGTCGCAT CGTCCATCTT GGCCAGCAAG ACCAGACGGC TGGTGCGCTC TACGAGCACG 
CCCACCGAGG ACTGATTGCC CGCGCCCTTG ATGAGGTCGC CCTCCCAGTG ACCGGGCAGG 
AGTCGATCCT CGACCTCAGG CGGACGCACG TGGATGCTCA CCATCTCGGG GATCTGGCCG 
CGCCGATCCT GGCCCCGCGT GCGTGGCAGG CGTGTACTGT GGCCCTGGCG CAGGCAGGCG 
ATGAGTTGGC GACGCAACTC ACCGCGGGGT TGCGCGTAGA TGGCCGTGTA GATGGTTTCG 
TGGGACACGC GACGTTCGGG CTCTTGGGGG AACACGCGCT CGAGCGTAGC GGCGATCTGC 
TGGGGCGACC ACTTCCAGCC CAGCAGGATC TGCACGACGC TCCACATCAC ACTGCGCGGA 
TCGAGTTTGG CCATCGGTCG ACTGGCCTGG CGGCGCGCGG TGCGCATCGA TTGCGCGGGC 
ACACTCGCAT ACCCGCCCGC AGTGCTGACG TTGCGGCGCA GTTCGCGACT GACCGTGCTC 
GCCGGCCGCC CCAGCGCACG CGCCATGGCG CGAATGCTGC ACCCCTGCTG TTTCATGCTC 
GCCAGCGTCA TGCGCTCTTC GGGTTGAAGT TGTCTGTACG TCGATCTGTC TTGCATCTGG 
GCACCTTACC GGAGGCAAGG TGTTGCACTT CAGATTTGAG GCCGCCTCGT TTGATCTTGG 
GGATGGACTG GATGAAGTCG ACAATAGTGC AGTAGACAGT GCCACTACCA CTGACGTGAT 
CAAGTTTGGG GCGGACATTA CAGCCGCACA AGTGATCGTC AATCGTGCTG AAAATGATCT 
TGTTCTGTAT GTCGGCGACT ACGACCGCAT CATCGTCAAA AATCATTTTG CGGCTGATTC 
TGTGAGCCAG ATCGATCAGA TCAATTTCTC CGATGGTCTG ATTTGGAGCA CTGCAATACT 
GGCAACCCTG ATTATCCCGA CTGTGGCATC GGACCGCAGT GACGTTATAG CTGGCACCAA 
TGGCACCGAT GTGGTGTATG CCTCCTTCGG AAACGACGAT CTGCGCCCGT CGGCTGGAAA 
TGACTACCTT GACGGCGGGT ATGGGAGCGA CAATTACCAC CTGACAACAA ACTCCGGAAT 
GGACGTCATC GTTGAGCTGG CTGTTGATGG CCAGTCCGTC AACACCCTAA ATCTAGGCCC 
GGGCATCACT CGCGAAAATA TTTCCATTGG TCGATCATGG TCCTCTATTT CGGGCGACGT 
GAACTTATCG ATCGGATACA ATCCGCAGCC CGGTCAAAAC ATAATTAATA GCGTAGACAT 
CCACGGCTTC TTTGAAGGTG ATGATTATTC TGACTCGATC GATATCGTGA GGTTCTCAGA 
TGGATCAACA CTGACAGCGC AGGATATATG GTCTTCAAAC GGAATTCCGA CCGGTGAACT 
TGTACTTCCT GGCAACACTG CCTTTGGAGG CATGACAAGT GATTTTATTG AAGGAGATGG 
TTTCCAGAAC TATCTCTATG GGCTCGCGGG AAATGACACT ATATGGGGAG GCGTCGGGGA 
TGACTTGATC TGGAGTCACT CGGGAGACGA CACCTTGAAC GGCGGAATCG GCAATGATAA 
GCTGGACGGC GGCGCGGGCG TCAATGTGTA TGAGTTCTCG CGTGGCGATG GTGTCGACAC 
GATTGCAGCG CGTCGGGCCT GGACTGATGG CGGAACGGAA GTCGTGCGAT TCGGCAGTGG 
CATTTCATCC AGTGACATTA GTGTTCGTTG GGATGATTCG TTCGACACGT ATTGGCAAGA 
GCAATCAGCA TCCACCAATA ACGGCATCAG TGTGCGCCGC ATACGCTTAG ACGTGAACAG 
TGCCGGCGGT CAAGTGTTAT TAAGCAGCCA ATACCTGGAG ATCGCATCTC AAACGGAACT 
GCTAGTTGAA TTCGCCGACG GCACCGTGTG GCAGGCCGAT GATCTACTGG CCAAATTGGA 
GTTCACTGGG ACCGCAGGCT CGGACGTCAT AGTCGGCACT GCGAACGCAG ATCGCATTAA 
TGGCGTGCAG GGCGATGACT TTTTGCAGGG TGAAGCTGGC AATGACACCT ACACCTTCGT 
TGCAGGCGAT GGCATCGATA TCGTCAGCGA TACAGAGGGG GCTGATACGG TTTATTTCGG 
CGCTGGAATC ACCGCTTCGC AGTTATTCCT AAGCGAGCAG GCAGCCGGTC CGCTTGAGAT 
TTTTTATTCT TCATTCGATC GCGTCAGCAT ACAACGCACC GTGAATGGCA CGCGGGCAAT 
TGAGAACATC AAATTCGCCG ACGGCACCAT CTGGTCACCT ACGGATATTA CTGATCATGT 
CAGCAAGGAA GCGGGCACGC CATTTTCAGA TGTGATCAAT GGAACTGACA CCGTCGATTT 
GTTGAATGGA CTTGCCGGCG ACGATGAGAT CGTCGCACTC GGTGGTAACG ATACATTGAC 
AGGGGGTGCC GATCGAGATC GGCTCAATGG TGGAACTGGA GCAGATACCT ATATTTTCGC 
ACCTGGCTCT GGGCGTGATT CGGTTACTGA TAGCAGAGAC GGTGTCGCCG ACGACAACAT 
CATTCGAATA CAAAGCCTCT TGCCCGCACA GATAATCGTA TCGAGGGATC AATCAGATCT 
TTATATTGGG GTGACTGGCA CAAACGACTG GATCGCCTTG CGAGACTGGA TGCGATCTCC 
CGTTTTACCG ACTGATCTGA ACTACCAAGC CTATCGGGTG CAATTTGATG ATGGAACCCT 
ATGGAACTCA ACTGCACTTC TGTCGCGGTT GAATACATCT GTTCTCTCGA CCTCTGACGA 
TGTCTGGTAC GGCAGCAGTG GCAATGATGC AGCTGACGGG CTCGCCGGGA GCGACGTACT 
CAGCGGTGCG GCTGGCAATG ACCGCATATC CGGGGCTGGG GGTAACGATA CCCTCGATGG 
TGGGGTCGGC AACGACTTGC TGTTCGGAGG TTCAGGCGAC GATCACCTCT GGAGCGACGA 
GGGTGTCGAT CTCCTGGATG GGGGCGACGG ACTGGATGAA TCGTCCTTGT ACAGCACGGG 
CATCTTGATT GGCGGCACTG GCAACGACTT CGCCGATGTG GGCGATTTCA GTGGTGTCGG 
GATGAAGGTG TTGGGATTAT TCAATAGCGG CGATGGTGAC GACGAAATCC ATCTCGATGT 
AGGCACCAAT TCAACATTTG TGCTATCGCT TGGCGGTATA GGTGCCAGCG AAGTCGCTCT 
TTCGTCTAGT TCGACAGGGG GAGGTTTTCC TACGATCGGA TTCGGCACCA AGGGCTCGGT 
TGCCTTGAAT ATCGTCGGCC CCCTGCCCAC GACCATTCTG CAAACAGTCG CGCTGAATTC 
GATTCAAACC TAGGCGGCCT CAAATCTGAA GTGCAACACC TTGCCTCCGG TAAGGTGCCC 
AGATGCAAGA CAGATCGACG TACAGACAAC TTCAACCCGA AGAGCGCATG ACGCTGGCGA 
GCATGAAACA GCAGGGGTGC AGCATTCGCG CCATGGCGCG TGCGCTGGGG CGGCCGGCGA 
GCACGGTCAG TCGCGAACTG CGCCGCAACG TCAGCACTGC GGGCGGGTAT GCGAGTGTGC 
CCGCGCAATC GATGCGCACC GCGCGCCGCC AGGCCAGTCG ACCGATGGCC AAACTCGATC 
CGCGCAGTGT GATGTGGAGC GTCGTGCAGA TCCTGCTGGG CTGGAAGTGG TCGCCCCAGC 
AGATCGCCGC TACGCTCGAG CGCGTGTTCC CCCAAGAGCC CGAACGTCGC GTGTCCCACG 
AAACCATCTA CACGGCCATC TACGCGCAAC CCCGCGGTGA GTTGCGTCGC CAACTCATCG 
CCTGCCTGCG CCAGGGCCAC AGTACACGCC TGCCACGCAC GCGGGGCCAG GATCGGCGCG 
GCCAGATCCC CGAGATGGTG AGCATCCACG TGCGTCCGCC TGAGGTCGAG GATCGACTCC 
TGCCCGGTCA CTGGGAGGGC GACCTCATCA AGGGCGCGGG CAATCAGTCC TCGGTGGGCG 
TGCTCGTAGA GCGCACCAGC CGTCTGGTCT TGCTGGCCAA GATGGACGAT GCGACGGCCG 
CTTCAGCGCT GGCGGGCTTT GCTGCCAAGC TCAATTCGAT CACCGCGCCG ATGCGCCAGA 
GTCTGACCTA CGACCAGGGC CGGGAGATGA GCCGCCACCA GGCGTTGGCC GCCGCGACCG 
GCGTGAAGGT CTACTTCTGT GATCCGCACA GCCCCTGGCA GCGCGGCACC TGCGAGAACA 
CCAACGGGCT GCTGCGCCAG TACCTGCCCA AGGGCACCGA TCTGTCGGTC CATACGCAGG 
ATGCGCTTGA TGCCATTGCT GACAGCCTCA ACAACCGGCC CCGCGCGACG CACAACTTCC 
ATTCGCCCCT GGAGGTATTC GCAGCCGTGT TGAAAAAGCT CGATCAACCC GATTCTTCTA 
TTCATTGACC CGGGTGTTGC ACTTGGGACT TGAAACCGCC CTACGACCTG AACGCGGTCT 
ACGCCGATTT CCAGGCAGCG ATCGTGGCCA ATCCAGGCCT GACGACCTGG TCCGCCAGCA 
CATCGCTGGC TGCGCACCGC ATTTCGAGCA GCAGCAGCCA AGCCTACGGG GGTGACGTTG 
CCTACCGCTA CGCGATCGAT GGTGGTTTCG CCAACTTGGC GGACAGTGCC CTCACCCAAT 
ACCTGGGCAG CGCTGGTTTC CTCGTCAACC CGGAGGTTGT ATCCACGGGA TCGATCGTGG 
GTACGGCGGG CAATGACACC TTGGTAGGCA CCGCAGCCGC AGACACCATC AACGGCTTGG 
CCGGCAATGA CACGCTGGAC GGTGGCGCGG GAATCGACAC GATGGCCGGG GGTGTGGGTG 
ACGACACGTA CTTGGTAGAC AACACCAGCG ATGTCGTCAC AGAGTTGGCT GGCGAAGGCA 
TCGACACGGT CCGGTCGGCA ATCACGCTGA CCCTGGCCAC CAACGTCGAG AATCTCACGC 
TGACCGGAAC AAGCCTGATC AACGGTACGG GCAACACGCT GGCCAACGTG CTGACCGGCA 
ACTCGGGCAA CAACACCCTC ACCGGCAACG CCGGCGACGA CACCTTGGAC GGTGGCGTTG 
GAACCGACAG CCTGGTGGGC GGTGCGGGCA ATGACCTCTA CTTTGTCGAT GTGTCCACCG 
ATGTGGTGAC CGAAGCGGCC AGTGCCGGCA CGGACACCGT GCGCTCGGCG GTGACGTTGA 
CCTTGGCTAC CAATGTCGAG AATCTGATCC TCATCGGAGC GGCGACCATC AATGGCACGG 
GCAATACGTT GGCCAACACC CTCAGCGGCA ATGCCGCCGC CAATGCCTTG AACGGCGGCA 
CTGGCGCAGA CAGCATGTCG GGCGGCGCCG GTAATGACAG TTACACGGTG GACAACGTCG 
GCGACGTCGT CACCGAACTC GCGAACGAAG GCACAGACGC CATCAGCAGC AGCGTGACGT 
ACACATTGGG AGTCCATGTC GAGAACCTCA CGCTGACCGG CAGCAGCCTG CGCAATGGCA 
CCGGCAACAC GCTTGCAAAC GTACTGACCG GAAACTCGGC CAACAACGTT CTCACAGGCC 
TGGAGGGTGA CGACACGCTC AACGGCGGCA CCGGCAATGA CACGATGCGC GGTGGCGCCG 
GCAACGACGT CTACTTCGTG AACGTCGCCA CCGACGTGGT GACCGAGGCG GCCAACGAAG 
GCACGGACAC CGTGCAGTCA GCGGTCACCT TGACCCTGGG CAGCAGCGTC GAAAACCTCG 
TCCTGACCGG AACAGGCTTG ATCAACGGAA CAGGTACTAC GCTCGCCAAC ACGCTCACTG 
GCAACTCAGG CAACAACACC CTGACCGGCT TGGCTGGCAA CGACACCCTC AATGGGGGTG 
CCGGAACCGA CATCCTGATC GGCGGCACGG GTGCGGACAC CTACCAGTTC GGCGTGGGGT 
CGGGTGTCGA CACCGTGCAG GAGAACGACA GCACCGCGAG CGTGATCGAC GGGGTCAGCC 
TCTCGGGCAG CCTGACGCAG GCCAATTTGC AGTTCTCGAA GGTGGGCAAC AACCTCGAGA 
TGCTGATTGC CGGCGGCACC GACAAGATGA TCTTCAAGGA CTGGTATCTG GGCAGCGCCT 
TCCACGTCGA GCGATTCAGT TTCAGCAACG GCTCGGTGTT GACCGACACC CAGGCGCAGG 
GTCTGGTGGG AGCGATGGCC GCTTTTGCAG CACCAGCGGC GGCGAGCACA TCGCTCGACA 
GCACGATGAC GTCGAGCACG ACGATGCGGA TCGGCATCGC CGTCAGCGGG CTGCTGTGA 

 

Protein sequence