| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2996 |
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| Symbol | |
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| ID | 6163843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3300066 |
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| End bp | 3302339 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665773 |
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| Product | helicase domain-containing protein |
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| Protein accession | YP_001792023 |
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| Protein GI | 171059674 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 89 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACC AATCGAACCC GACTCCCTCC CTGCCCAAGC GCGCGCCCGT GCGCGCCAAC
GAGACCCTCA ACCTGCCCGT GCCGCGCCAC GCCAAACGGG TGCCGGCGCA CATCAGCAAG
GAGCAGGTCG GGCGCCTTCG ACAGAACGCC TACAACCTGC CGCAGGTGGT CAAGCCGGCC
GATTACCTGC CGGAAAACAG CGAAGGCCTC GAAGAACACC TCGACACGCT CGGCATGGTG
CTGCTGCAGA AGGCGGTGGC CGGCGCGCGG CCCAGCCGCT GGATCGCGCC CGAGCTGATG
GACGTCGCGC TGGCCCACAT CGAGGCGGTC GGCACCGGGC CGACGATGCG CCCGGCGCTG
CTCGAACGCA CCGCCGCGCT CGAGGCGCTG GGCGTGTCGC GCCACCTGGG CGAGTGGACG
CGCCTGATCA GCCACGCGCT GACGCTGTCG GAGCCGGGCT GGCGCGTGCC GGTGCTGTTC
CGGCTGCCGG TCGATGCGCA GCCGGTCTGG GCCTTCTACC GCACCGGCGA CCGCGCCGCG
CTGCTGGCGG CGATCGGCGC GCCGGTCGGC TATCCGCATG CGGCCGAGCT GCTGGCGCAC
CTCGAATCGC TGCTGGCGCG CAGCCGCTCG TTCAAGTCGC AGCACCTCGA GTCGCTGCTG
CCGCGCCTGC TGGCCGAATG TGCCGTGCCG CAGTCGCCGG CCCAGTTCGC CGAGCTGAAG
GCCGCCTGCA GCCGGGCCCA GGAACGCTGG GAACACCGCG CCACCGAGCT CGACACGCTC
GAAGGCCTGA ACTCCGAGCT GGCGTTCCAG GGCTACCCGG ACACCTTCGT GAAGGCGCGC
AACCTGCAGC GCAACGTCAC GCTCTACGTC GGCCCGCCCA ACAGCGGCAA GACCTACGCC
GCCTTCGAGC GCCTGGCCCA GGCGATCGAC GGCGCCTACC TGGCGCCGCT GCGGCTGCTG
GCGCTCGAAG GGCGTGATCG CCTGGTCGGG CGCGGCGTGC CGTGCTCGCT GCTGACGGGC
GAGGAGAACG TGCCGGCCGA GGGCGCGCGG GTGGTGTCGA GCACCATCGA GATGGTCAGC
ACCAACACGC CGATCGACGT GGCGGTGATC GACGAGGCGC AGATGATCTT CGACAACTCG
CGCGGCTGGG CCTGGACCCA GGCGATCGTG GCGGTGCCCG CGCGCGAGGT CATCATCATC
TGCTCGGCCT ACGCGGTGCC GGCGATCGAG AACCTGCTGG GCCTGTGCGG CGAGCGCTGC
ACGGTGCGCG AGTTCGAGCG CAAGCAGCAC GTCGAGCTGC TGCCGCACGC GGTGTCGCTG
TCGGGCCTCA AGCTCGGCGA CGCTGTGGTG GCGTTCAGCC GCCGCGAGGT GCTGTCGCTG
CGCGACAAGA TCGCCGCCAG CGGCCACCCG GTGTCGGTGA TCTACGGCGC GCTGCCGCCC
GAGGTGCGCC GCCGCGAGGC CGAGCGTTTC GCGCACGGCG AGTCGCACGT GCTGGTCGCC
ACCGACGCCA TCGGCATGGG CCTGAACCTG CCGATCCGCC GCGTGCTGTT CAGCACCCTG
ACCAAGTTCG ACGGCCAGGC CGACCGCTCG CTGAGCGAGT CCGAGGTGCA CCAGATCGCC
GGCCGGGCCG GCCGCTACGG CATGCACGAG GAAGGCTTCA CCGGCGTGCT GAAGGAGGCC
GAGCCCTCGG CCGAGCGCAG CCTGAAGGAC CTGCTGCACC GCGCCCCGCG CGCGCCGCGC
GACTTCAAGG CGCCGGTGGC GCCCAACGGC TGGCACGTCG ACACGATCTC GAGGCGGCTC
AACAAGACCC GCCTGCGCGA GGTGCTCGAC GTCTTCATGG ACCAGCTCAA GCTCGACGAC
GCCCACTTCG CGGTGGCCGA ACTCGAGCAG ATGCTCGACC TGGCCGAGAA GCTCGACATC
AGCGCCGCGG GCCTGACGCT CAAGGAGCGC TTCACCTACG CGCAGGCGCC GGTCGACACC
CGCACCGAAT CGCAGGTGCA GGAATACCTG GAGTGGAGCA GCAACCACGC CCGCACCGGC
CGTGCCGGCA CGCCGTGGTT CCTGCAGGGC GTCGACGGCC ACAGCCGGCT CGACCGCATG
GAGCAGGCAC TGCGTGCGTG CACGCTGTGG CTGTGGCTGG ACCTGCGGTT CCCCGGCGTC
TACGGCCACC TCGACGAGGT GATCGCGCTG CGCTCGGACC TGAACGACGG CATCGAGCGC
CAGCTCAAGG GCAAGCGCCC GCTGTCGCAG GTGCGCCACC GCGCGCGCCG CTGA
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| Protein sequence | MPDQSNPTPS LPKRAPVRAN ETLNLPVPRH AKRVPAHISK EQVGRLRQNA YNLPQVVKPA
DYLPENSEGL EEHLDTLGMV LLQKAVAGAR PSRWIAPELM DVALAHIEAV GTGPTMRPAL
LERTAALEAL GVSRHLGEWT RLISHALTLS EPGWRVPVLF RLPVDAQPVW AFYRTGDRAA
LLAAIGAPVG YPHAAELLAH LESLLARSRS FKSQHLESLL PRLLAECAVP QSPAQFAELK
AACSRAQERW EHRATELDTL EGLNSELAFQ GYPDTFVKAR NLQRNVTLYV GPPNSGKTYA
AFERLAQAID GAYLAPLRLL ALEGRDRLVG RGVPCSLLTG EENVPAEGAR VVSSTIEMVS
TNTPIDVAVI DEAQMIFDNS RGWAWTQAIV AVPAREVIII CSAYAVPAIE NLLGLCGERC
TVREFERKQH VELLPHAVSL SGLKLGDAVV AFSRREVLSL RDKIAASGHP VSVIYGALPP
EVRRREAERF AHGESHVLVA TDAIGMGLNL PIRRVLFSTL TKFDGQADRS LSESEVHQIA
GRAGRYGMHE EGFTGVLKEA EPSAERSLKD LLHRAPRAPR DFKAPVAPNG WHVDTISRRL
NKTRLREVLD VFMDQLKLDD AHFAVAELEQ MLDLAEKLDI SAAGLTLKER FTYAQAPVDT
RTESQVQEYL EWSSNHARTG RAGTPWFLQG VDGHSRLDRM EQALRACTLW LWLDLRFPGV
YGHLDEVIAL RSDLNDGIER QLKGKRPLSQ VRHRARR
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