| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2945 |
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| Symbol | |
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| ID | 6159711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3246824 |
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| End bp | 3249370 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665724 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001791975 |
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| Protein GI | 171059626 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCATC GCCTGCCCCC TCCCCTGCGC GACATCGAGT CGCCCGCCGG CGGCCCGGCC
GCCCAGCCGA CGGTCGAACC GGCCCTGCAG CAGCTGCTCG CCGGCCTGAT CGAGGCCGCG
TGTGTCGTCG ACGCCCGTGC GCTGCACCTG CTCGCCGCCA ACGCCGCCGC CTGCGACCTG
TGGGGCTGCA GCCTGCCCGA GCTGCTCGGC CGGCCGGTGG TCGAACTGGC CGTCACGCCG
GAAGACCAGC TGTTCTGGCT CGACCTCGAG GCCGACCCCG GCCAGCACGA CGTGCACCTG
CATTCCGACA GCCTGATCGA GCGCGGCGAC GGCAGCCTGC GCGTGGTCGA GCGCCGCGTC
AGCCTGATCC GCCTGGCCTG CGGCAGCCCC GCCTGGCTGC TCGTGCTGGT CGACCAGCAG
AACGCCCAGC AGCTCGCCGA CGAGGTCAGC CGGCTCGCCA GCGAACTCGG CGCCACGCTC
GAATCGAGCC ACGAGGCCAT CCTCGTCACC GACCTGAACG GCCAGGTGCG CAGCCACAAC
GCGGCGTTCG CGACGCTCTG GCGACTCGGC GACGATGATG ACAGCGGCGC CGACGACGGC
ACGGCCCGCA CCGCCGGCGC CCGCCTGACC GCGCAGATCA GCCGCGCCAT GGCCGACCCG
CTCGGCTACG AGACCCTGCT CGACCAGCGC CAGGCCAGCC TGAGCGCCCC CCTCGGCGCC
ACCGAACCGG TCGGTGCCCG CTGCGCCACC GACCGGCTGC TGCTGGCCGA CGGCCGCACC
TTCGAGCGCC GGCTGGTGCC GCAGTACGGC CGCGGCCAGG CGGTCGGCTG GGTGCAGGTC
TGGCGCGACC TGAGCCTCGA ACTGGCCCAG CAGGCGCGCC TGCAGGTGGC CGCGCAGGTG
TTCGAGGCCA GCCTCGACGC CCTGATCGTC ACCGATGCGC AGCACCGCAT CGTCGCCACC
AACCCGGTCA CGCAGGCCTT GACGGGGCTC GATGCCGGCG CGCTGCAAGG CCGCACACTG
GCCTCGCTGC TGGCCGACAC GATGCAGGCG CAGGTGATCT CCAACGCGCT GGCCGAGCTG
CCGCGGCTCG GCCACTGGCA GGGCGAACTG ACGCTCGGCA GCCCGCTGGG CGCGCTGCCG
GTGCAGGCCC ACCTGATCGA CATGGCCGGC CTCGAACGTG GCGGCGCAGG CGGCTGCATC
GTGGTGCTGC GCGACCTGCG CGAGCGCCTC GCCCAGGAGC GCCGGCTGCG TGAGCTGGCG
CTCACCGACG CGCTCACCGG CCTGCCCAAC AGGCTGCAGC TCGACCAGAA AGTGCGCGAC
GAGGTGCAGC GCTGCCAGAA GGCGACCGGC GGTTTTGCGC TGCTGCTGTT CGGCCTGGAC
CGCTTCACCC ACATCAACGA CTCGCTCGGC CACGGCTGTG GCGACCGGGT GCTGGTCGAG
GTGGCGCGCC GGCTCAGCGC CAACGTGCGC CTGGGCGACG CGGTGGCGCG GCTGGGCGGC
GACAGCTTCG TCATGATGCT CAAGGACAGC GACGCCGCCG CGGCCGAGCC GATCGCCCGC
CGGCTGCTCG AGCAGCTGGC CGAGCCGCTG GCGCTCGACG GCCTGCGCCT GACGATCAAG
GCCAGCGTCG GCATCGCGCT GTTCCCGGCC GACGGCGCCG ACGCCGACAA CCTGCTCAAA
AACGCCGACA GCGCGATGCA CCGCGTCAAG GAACGCCAGG GCGGCGCGCT GCGCTTCTAT
CAGCCGCAGA TGAACGACGA CCTGCTGGCG CGCATGCAGC TCGACCACGC GATGCGCCAG
GCGCTCGCCC GCGGCGAGTT CCGGCTGCAC TACCAGCCGC AGCTCGACCT GCACAGCGGC
GCGGTGATCG GTGCCGAGGG CCTGTGCCGC TGGCGCGATG CCGAGCGGGG CGAGGTGTCG
CCCGGGCGCT TCATTCCGGT GGCCGAGGAG ACCGGCTTCA TCGCCGAGCT CGGCCACTGG
GTGCTGTGCG AGGCGGTGGC GCAGGCGGCG AGCTGGCGCC GCCAGGGGCT GCGGATGCCG
GTGTCGGTCA ACGTGTCGGC GCTGCAGTTC CAGGCCGCCG GTTTCGTCGA CAGCGTGGCG
GGCGTGCTGG CGCAGGCGCA GCTGCCGGCC GAGCTGCTCG AACTGGAGCT GACCGAGAGC
ATCCTGCTGG GCGACATCGA CGAGATCGTC GGCCAGCTGC AGCGCCTGGC CGACCTGGGC
GTGAAGCTGG CGATCGACGA TTTCGGCACC GGCTACTCCA GCCTGCGCTA CCTCAAGCGC
CTGCCGATCC ACCGCCTGAA GATCGACCGC GACTTCATCC GCCGCCTGCC CGACGACCCG
AGCGACGCCG CCATCACCCG CACCATCGTC GACCTCGGCC GCGCGCTGCA CCTGCAGGTG
ATCGCCGAGG GCGTCGAGAC GCCCGAGCAG CACGCCTGCC TGGCGGCGAT GGGCTGCCAC
GAGTACCAGG GTTTCCTGTT CGCGCCGGCG CTGCCGGCCA CGCAGTTCGA GGCGCTGCTG
CGGCAGAGCC TGCGCCGGCT CGCCTGA
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| Protein sequence | MSHRLPPPLR DIESPAGGPA AQPTVEPALQ QLLAGLIEAA CVVDARALHL LAANAAACDL
WGCSLPELLG RPVVELAVTP EDQLFWLDLE ADPGQHDVHL HSDSLIERGD GSLRVVERRV
SLIRLACGSP AWLLVLVDQQ NAQQLADEVS RLASELGATL ESSHEAILVT DLNGQVRSHN
AAFATLWRLG DDDDSGADDG TARTAGARLT AQISRAMADP LGYETLLDQR QASLSAPLGA
TEPVGARCAT DRLLLADGRT FERRLVPQYG RGQAVGWVQV WRDLSLELAQ QARLQVAAQV
FEASLDALIV TDAQHRIVAT NPVTQALTGL DAGALQGRTL ASLLADTMQA QVISNALAEL
PRLGHWQGEL TLGSPLGALP VQAHLIDMAG LERGGAGGCI VVLRDLRERL AQERRLRELA
LTDALTGLPN RLQLDQKVRD EVQRCQKATG GFALLLFGLD RFTHINDSLG HGCGDRVLVE
VARRLSANVR LGDAVARLGG DSFVMMLKDS DAAAAEPIAR RLLEQLAEPL ALDGLRLTIK
ASVGIALFPA DGADADNLLK NADSAMHRVK ERQGGALRFY QPQMNDDLLA RMQLDHAMRQ
ALARGEFRLH YQPQLDLHSG AVIGAEGLCR WRDAERGEVS PGRFIPVAEE TGFIAELGHW
VLCEAVAQAA SWRRQGLRMP VSVNVSALQF QAAGFVDSVA GVLAQAQLPA ELLELELTES
ILLGDIDEIV GQLQRLADLG VKLAIDDFGT GYSSLRYLKR LPIHRLKIDR DFIRRLPDDP
SDAAITRTIV DLGRALHLQV IAEGVETPEQ HACLAAMGCH EYQGFLFAPA LPATQFEALL
RQSLRRLA
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