Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2907 |
Symbol | |
ID | 6160237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3202286 |
End bp | 3203452 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641665686 |
Product | type IV pilus assembly protein PilW |
Protein accession | YP_001791937 |
Protein GI | 171059588 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4966] Tfp pilus assembly protein PilW |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.952407 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCTGC ATCCAAGCGC CCGCACACGC CGCCCGCTGC TCGCGCGCCA GCGCGGCGTC ACCCTGGTCG AGCTGATGGT CGGCCTGGTC ATCGGCCTGC TCGCCACCCT CGTGATCGCG CAGGTGGCGA TCGTCTTCGA GGGCCAGAAA CGCAGCACCA CCGGCGGCTC CGACGCCCAG CTCAACGGCG CGCTGGCGCT GCAGACGCTG CAGCGCGACA TCCAGCTCAG CGGCTACGGC ATCGCCACCG GCGGCGGCGC GGGCTGCGAA TTGCGCGGCT CGCGCAATGG CACGGTGCCG CCGTGGAATG GCCAGCCGAT GGTGGCGGTG CGCATCGTCG ACGGCACCGA CGTCGCCACC GGCTCGCCCG ACTCGCTGTT CATGCTGTTC AGCGGCAAGG CCGACTCGTC GTTCTATTCG CTGCCGATCC GCGTCTATCA GAACCACCGC CGCGACGGCA GCGAGTTCGT GCTCGACGAG CGCACCAACA TCGGCACGGC GCAGGGCGAC ATGATGGTGG TGGTGCCCAC CCCCACCCCG CTGCCCAGCG CCAGCCAGGT CACGCCCAGC TGGTGTTCGG TGTTCAACAT CAGCGTCGAC CCGGCCACCA CGGACAACCG CATCGTCCAC CAGCCCGGCA CCGACGGGCC GTGGAACCAG GACAGCACCA ACACCGTCTT CCCCGGCGCC GTCAACGCCG ACACCAGCTA CGCCGCGGGC AGCCACCTGG TCAACCTGGG CACCATGACC TACCGCGAAT ACAGCCTCAG CACCAGCACC ACCGGCAGCG CGCTGCAGAT GCGCTCGGTC GACAACAACA CCGCGCAGTG GGTCACGGCC GACGCGCTGT TTCCGCAGAT CGTCAACCTG CAGGCGGTCT ACGGCCGCGA CACCTCGGTC ACCCGCGACA ACGTCGTCGA CGCCTGGGAC AACACCGCGC CGACCACCGC CGACGGCTGG TCGCGCGTGA TCGCGGTGCG CATCGCGCTG GTGGCGCGCA GCAACCAGCG CGAGAAAGAG ATCGTCACCG TCACCGAACC CACCTGGATG CCCGACGGCG TGAACACGCA GCCCCTCAAG GTCGACCACC TCGACAGCTG GCAGCACTAC CGCTACAAGG TCTTCGAGGC CGCGGTGCCG CTGCGCAACA TGCTCTGGCA ATCGTGA
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Protein sequence | MNLHPSARTR RPLLARQRGV TLVELMVGLV IGLLATLVIA QVAIVFEGQK RSTTGGSDAQ LNGALALQTL QRDIQLSGYG IATGGGAGCE LRGSRNGTVP PWNGQPMVAV RIVDGTDVAT GSPDSLFMLF SGKADSSFYS LPIRVYQNHR RDGSEFVLDE RTNIGTAQGD MMVVVPTPTP LPSASQVTPS WCSVFNISVD PATTDNRIVH QPGTDGPWNQ DSTNTVFPGA VNADTSYAAG SHLVNLGTMT YREYSLSTST TGSALQMRSV DNNTAQWVTA DALFPQIVNL QAVYGRDTSV TRDNVVDAWD NTAPTTADGW SRVIAVRIAL VARSNQREKE IVTVTEPTWM PDGVNTQPLK VDHLDSWQHY RYKVFEAAVP LRNMLWQS
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