Gene Lcho_2906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2906 
Symbol 
ID6160236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3201857 
End bp3202276 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content65% 
IMG OID641665685 
Producthypothetical protein 
Protein accessionYP_001791936 
Protein GI171059587 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4967] Tfp pilus assembly protein PilV 
TIGRFAM ID[TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.809421 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCGCA TCACATCCCC CACCGCCCGA GGCCGCAGCG ATCGGGGCTT CGCGCTGATC 
GAGGCGCTGA TCGCGATCGT CATCTTCTCG CTCGGCGCGC TCGGCCTGCT GGGCCTGCAG 
GTGTCGATGA TGAAGGCCAC CAGCGGCGCC AAGTTCCGCG CCGACGCCGC CTATCTGGCC 
AACGACCTGG TCGGCACGAT GTGGGCCGAC GCCGCCAACC TGGCCGCCTA CCGCGACAGC 
TGCTCAAGCC ATCTGCCGTG CAGGAACTGG ATTGCCAAAG TCAGCCAGAC ACTTCCGGGC 
AACGTTCCGC CCGAGTTGGA GATCGTTCCG AGCACCGGCT ATGTGGGCAT CAAGATCTTC 
TGGATCGTGC CCAACGAAGC GCAGCACAGC TTCAACACCA GCACCTCGAT CAATCGCTGA
 
Protein sequence
MRRITSPTAR GRSDRGFALI EALIAIVIFS LGALGLLGLQ VSMMKATSGA KFRADAAYLA 
NDLVGTMWAD AANLAAYRDS CSSHLPCRNW IAKVSQTLPG NVPPELEIVP STGYVGIKIF 
WIVPNEAQHS FNTSTSINR