| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2889 |
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| Symbol | |
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| ID | 6160201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3182674 |
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| End bp | 3184389 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665668 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_001791919 |
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| Protein GI | 171059570 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00713702 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCATGC TCGAGAACCC AGCCGTCAAG TACCGTGCCG CTGCAACGGT GCGACTGCCG
GACCGCCGCT GGCCCGATGC GGTGATCGAC CGCGCGCCGA TCTGGCTGAG CACCGATCTG
CGCGACGGCA ATCAGGCGCT GATCGAGCCG ATGGACGTGC AGCGCAAGCT GCGGCTGTTC
GAGACGCTGG TGCGGGTGGG CTTCAAGGAG ATCGAGGTCG GATTCCCGTC GGCATCGCAG
GCCGACTTCG ATTTCGTGCG CACGCTCATC GAGGAGCGGC TGATTCCCGA CGACGTCACG
ATCCAGGTGC TGACGCCGGC CCGCGCGCAT CTGATCGAAC GCACCTTCGA GTCGGTGCAG
GGCGCCCGGC AGGTGATCGT GCACCTGTAC AACGCCACCG CACCGGTGAT GCGGCGCGTG
GTGCTCGGGC TCGATGTCGC CGGCATCATC GATCTGGCCA CCAGCCACGC CCGGCTGCTG
GCCGAACACG CCGCGCGTCA GTCGGGCACG CGCTGGACAT TCCAGTACTC GCCGGAGATG
TTCTCCGACA CCGAACTCGA GGTGTCGCTG CAGGTGGTCG ACGCGGTGAC CGCGGTCTGG
AACGCACGGC CCGAGCAGCG CTGCATCATC AACCTGCCGT CGACGGTCGA GCACTGCACC
GCCAACGTCT TTGCCGACAT GGTCGAGTGG ATGCATCGTC ACATCGCGCG CCGCGATGGT
GTCGTGCTGT GCGTGCATCC GCACAACGAC CGCGGCACCG GCACTGCCGC GGCCGAGCTG
GCGATCATGG CAGGGGCCGA TCGGGTCGAG GGCTGCCTGT TCGGCAACGG CGAGCGCACC
GGCAACCTCG ACCTCGTCAA CGTGGCGCTC AACCTCTACA CCCAGGGCGT GGCGCCGGGG
CTGGATTTCT CGGACATCGA CGAGTTGCGC CGCACGGTGG AGTACTGCAA CCAGCTGCCG
GTGCATCCGC GTCATCCGTA TGTGGGCGAT CTGGTCTACA CCTCGTTCTC GGGTTCGCAC
CAGGATGCGA TCAAGAAGGC CTTTGCCGCC CGGCGTGAGG GCGATGCCTG GGAGATCCCC
TACCTGCCGA TCGACCCCAA GGACCTCGGC CGCAGCTACG AGGCGGTCAT CCGCGTCAAC
AGCCAGTCGG GCAAGGGCGG CATCAGCTAT CTGCTGGAGA CCGAGTACGG CCTCGAGTTG
CCACGTCGCC TGCAGATCGA ATTCAGCCAG GTGGTCCAGG CGGTGATGGA CGACTCCGGC
AAGGAGTTGA ACGCCTCCGA CATCTGGGCC ATCTTCGGGC GCGAGTACGG CCTCGGGCGT
GTCGATGATG CGATCGCACA GCCACCCTGC ATCACGGACC GCGGTCACGG TCAGGTCGAG
TTGCAGGCGA GCCTGGACGG TGCATGGGCC GGCGGTCCGG CGCCGCTGTT GCTCGACGGC
ATCGGCAACG GGCCGGTCGA CGCCTTCGTC GATGCCTTGT CGAAGGCCAC CGGGGATGCG
ATCCAGGTGC TCGACTACCA TGAGCATTCG ATCGGTGCCG GCGCCCAGGC GCGTGCGGCG
GCCTACCTGG AATTGCGAGT CGGCGGCGGT GCATCGCTGT TCGGTGTCGG CATCGATGCC
AACATCGCCA CCGCCTCGAT CAAGGCCGTG CTTTCAGGCT GGCACCGCGC AGCCTGCAGC
CCATCCACCG TGAATCAACA AGACGCCACC GTCTGA
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| Protein sequence | MSMLENPAVK YRAAATVRLP DRRWPDAVID RAPIWLSTDL RDGNQALIEP MDVQRKLRLF
ETLVRVGFKE IEVGFPSASQ ADFDFVRTLI EERLIPDDVT IQVLTPARAH LIERTFESVQ
GARQVIVHLY NATAPVMRRV VLGLDVAGII DLATSHARLL AEHAARQSGT RWTFQYSPEM
FSDTELEVSL QVVDAVTAVW NARPEQRCII NLPSTVEHCT ANVFADMVEW MHRHIARRDG
VVLCVHPHND RGTGTAAAEL AIMAGADRVE GCLFGNGERT GNLDLVNVAL NLYTQGVAPG
LDFSDIDELR RTVEYCNQLP VHPRHPYVGD LVYTSFSGSH QDAIKKAFAA RREGDAWEIP
YLPIDPKDLG RSYEAVIRVN SQSGKGGISY LLETEYGLEL PRRLQIEFSQ VVQAVMDDSG
KELNASDIWA IFGREYGLGR VDDAIAQPPC ITDRGHGQVE LQASLDGAWA GGPAPLLLDG
IGNGPVDAFV DALSKATGDA IQVLDYHEHS IGAGAQARAA AYLELRVGGG ASLFGVGIDA
NIATASIKAV LSGWHRAACS PSTVNQQDAT V
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