Gene Lcho_2458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2458 
Symbol 
ID6163347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2669833 
End bp2670843 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content67% 
IMG OID641665228 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001791488 
Protein GI171059139 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00000179067 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGTTCA AATCCCTCGC CCTGGCCGCC GCCGTGCTGG CCGCGCTGGC CGGCCCGGTG 
TCTGCGCAGA TCAAGGAACA CGTCTTCAAG GTCGGCATCG GCCTGACCGA AGACCACCCC 
CAGGGCCAGT CCGTCAAGCA TTTCGCCGAA CTGCTGGCTG CCAAGAGCGG CGGCAAGATG 
AGCGCCAAGC TGTTTGCCAG CGGCACGCTG GGCAACGACG TGACGATGAC CTCGGCGCTG 
CGTGGCGGCA CCCTGGAGAT GACGGTGCCC GACAGCTCCA CGCTGGTCTC GATGTCCAAG 
CCCTTCGGCG TGATCAACCT GCCGCTGACC TTCAACAGCG AGCTCGAGGC CGATGCCGTG 
CTCGACGGCC CGGTCGGCCA GAAGCTGCTG GCCAGGCTGC CCGAGAAAGG CCTGATCGGC 
CTGGGCTTCT GGGAGAACGG CTTCCGCCAC GTCACCAACT CGCGCCGCCC GATCACCAAG 
GCCGACGACC TGGCCGGCCT CAAGCTGCGC GTGATCCAGA ACCCGCTGTT CCTCGACACC 
TTCGGCGCGC TGGGCGCCAA CGCCACGCCG ATGCCCTTCA CCGAGCTGTA TTCGGCGATG 
GAGCAGGCCG CCGTGGACGG CCAGGAAAAC CCGCCCGCCA CCATCCTGGC CAGCAAGTTC 
TACGAGGTGC AGAAGCACCT GGTGCTGTCG CGCCACATGT ACAGCGCCTG GGTGCTGCTG 
ATGTCCAAGA AGACCTGGGA CGGCCTGTCG GCGCAGGAGC AGAAGATCGT GCAGGAGGCC 
GCCCGCGAGG CCACGCTGTT CGAGCGCAAG ACCATCCGCG CCTTCGGCGA CAAGGCGCTG 
GGCGAGCTCA AGAAGGTCGG CATGCAGGTC ACCGAACTGC CCGCCGCCGA GCAGGCCAAG 
ATGCGCGCCA AGCTGCAGCC GATCGTGGCC AAGTTCGGCA AGGAGTTCGG CGAGGACACC 
ACGGCCGAGC TGATGAGCGA GCTGGCCAAG GTGCGCGGCG CCGCCAAGTA A
 
Protein sequence
MKFKSLALAA AVLAALAGPV SAQIKEHVFK VGIGLTEDHP QGQSVKHFAE LLAAKSGGKM 
SAKLFASGTL GNDVTMTSAL RGGTLEMTVP DSSTLVSMSK PFGVINLPLT FNSELEADAV 
LDGPVGQKLL ARLPEKGLIG LGFWENGFRH VTNSRRPITK ADDLAGLKLR VIQNPLFLDT 
FGALGANATP MPFTELYSAM EQAAVDGQEN PPATILASKF YEVQKHLVLS RHMYSAWVLL 
MSKKTWDGLS AQEQKIVQEA AREATLFERK TIRAFGDKAL GELKKVGMQV TELPAAEQAK 
MRAKLQPIVA KFGKEFGEDT TAELMSELAK VRGAAK