Gene Lcho_2424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2424 
Symbol 
ID6164133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2632521 
End bp2633132 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content69% 
IMG OID641665194 
ProductNIPSNAP family protein 
Protein accessionYP_001791454 
Protein GI171059105 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.049725 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTTC ATGAACTGAC CACCCTGGAG ATCAAGGTCT TCAGCAACGC CGCCGTCTAT 
GCCGCCTTGC AGGAGAGCCT GCCGAGCGCC GGCGGCAAGC TGCTGGGCGT GTTCGCGTCC 
GACATCGGCG AGCTGAGCCA GGTGCTGATC CTGCGCGAGT TCGCCGACGC CAACGCGCTG 
GCCGACGCGC GCATGCAGAT GCTGCTGGCC GACAACCCGC TGGGCGTGGG CGAGTGGCTG 
GTCAAGCTCG GCTCGCAGAG CTACAAGCTG TTCCCGTTCC TGCCGGCGAT CGAGCCGGGC 
GCGATGGGGC GCTGGTACGA GTTCCGCACC TACAGCATCC GCCAGGGCGT GCTGGCGCAG 
ACGATCGACG CCTGGCGCGA CGCCATCCCG GCGCGCACGG CGCTGTCGCC GATGGTCGGC 
GCCTTCACGG CGCTCGACGG CGAGCAGCCG CGTTTCCTCA ACATCTGGGC CTACCCGAGC 
GTCGACGAGC GTGCACGCAT CCGCGCCGAA GCGGTGCAAA AGGGCGTGTG GCCACCCAAG 
GGCGGCCCGG CCAACCTGAC GCGCATGCAG TCGACGCTGT GCGCGCCGGT GGCGTTTTCG 
CCGCTGAAGT GA
 
Protein sequence
MTVHELTTLE IKVFSNAAVY AALQESLPSA GGKLLGVFAS DIGELSQVLI LREFADANAL 
ADARMQMLLA DNPLGVGEWL VKLGSQSYKL FPFLPAIEPG AMGRWYEFRT YSIRQGVLAQ 
TIDAWRDAIP ARTALSPMVG AFTALDGEQP RFLNIWAYPS VDERARIRAE AVQKGVWPPK 
GGPANLTRMQ STLCAPVAFS PLK