| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2404 |
|---|
| Symbol | |
|---|
| ID | 6161416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2611190 |
|---|
| End bp | 2611642 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665174 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_001791434 |
|---|
| Protein GI | 171059085 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.671288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCC AACTGACCCC GCAACAGATC GCCGAACTGG TCCGCGAGGG CATGTATGCG
CAAGACGACG CCGTGCGCGC GCTCGGCATC GCCATCACCG CCATCGGCCC CGGCAGCGCC
ACCGCCGTGA TGACGGTGCG CCCCGACATG CTGCAAGGCC ACGCCACCTG CCACGGCGGG
CTGCTGGCCA CGCTGGCCGA CACCGCCTTC GCCTACGCCT GCAACGCCTG CAACGAGGTC
ACGGTGGCCT CGGGTTTCAG CATCGACCTG ATGGCTGCCG CGCGCGAGGG CGACGTGCTC
ACCGCCGTCG CCCACGAGCT GCAGCAGGGC GGCCGGCTGG GCGTCTACGA CGTGGCCGTG
CACAACCAGC GCGGCGAGGC GGTGGCGGCG TTCCGCGGCC GCTCGTACCG CAAGCGCGGC
CAAGCCGTCG TCACGCTGCC TCTTTCAGCC TGA
|
|---|
| Protein sequence | MTSQLTPQQI AELVREGMYA QDDAVRALGI AITAIGPGSA TAVMTVRPDM LQGHATCHGG
LLATLADTAF AYACNACNEV TVASGFSIDL MAAAREGDVL TAVAHELQQG GRLGVYDVAV
HNQRGEAVAA FRGRSYRKRG QAVVTLPLSA
|
|---|
| |