Gene Lcho_2221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2221 
Symbol 
ID6160669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2423903 
End bp2424901 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content66% 
IMG OID641664991 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_001791252 
Protein GI171058903 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.1443 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGTC TTTCCACCCT TGCCATCGCC GCTGCTCTGG CTTGCGCCGC CGGTGCCTCT 
TTCGCTGCCG AGCCGGTCAT CGGCCTGATC ACCAAGACCG AAACCAACCC CTTCTTCGTG 
AAGATGAAGG AAGGCGCCGC GGCAGCCGCC AAGGCCAAGG GCGCCAAGCT GCTGAGCGGC 
GCTGGCAAGA CCGACGGCGA CAACGCCGGC CAGGTCACCG CGATGGAAAA CATGATCGCC 
GCCGGCGCCA AGACCATCCT GATCACCCCC AGCGACTCGA AGGCCATCAT CCCGGCCATC 
AAGAAGGCCC AGGCGCAAGG CGTGATGGTG ATCGCGCTCG ACAGCCCGAC CGACCCGGCC 
GAAGCCACCG ACGCGCTGTT CGCCACCGAC AACTACAAGG CCGGCGTGCT GATCGGCCAG 
TACGCCAAGG CAGCGCTGGG CGGCAAGACC CCGGTGATCG CCACGCTCGA CCTGTTCCCC 
GGCCACCCGG TGGGCGCGCA GCGTCACAAC GGCTTCCTGC AGGGCTACGG CCTGAAGTCG 
TTCGATGCCA AGAACAACGA GCTGGCCAAG CCGGCTGAAG TGGTCTGCAT GGCCGACAGC 
TTCGGCGACC GCGCCAAGGG CCAGACCGGC ATGGAAAACT GCCTGCAGAA GAACCCCAAC 
ATCAACGTCG TCTACACCAT CAACGAACCC GCAGCCGCCG GTGCCTACAA CGCACTGAAG 
GCCGCCGGCA AGGAGAAGGA CGTGCTGATC GTGTCGGTCG ACGGCGGCTG CGACGGCATC 
AAGGACGCCA GCGGCGGCAA GATCGCTGCC ACCTCGCAGC AGTACCCGCT GCGCATGGCC 
TCGATGGGCG TCGAAGCCGG CGTCGAATAC GCCAAGACCG GCAAGAAGGT CAGCGGCTAC 
ACCGACACCG GCGTGACCCT GATCGCCGCC AAGTCGATCG CCGGCGTCGA CAGCAAGGAC 
GCCAAGACGG GTCTGGACCT GTGCTGGGGC AAGAAGTAA
 
Protein sequence
MKRLSTLAIA AALACAAGAS FAAEPVIGLI TKTETNPFFV KMKEGAAAAA KAKGAKLLSG 
AGKTDGDNAG QVTAMENMIA AGAKTILITP SDSKAIIPAI KKAQAQGVMV IALDSPTDPA 
EATDALFATD NYKAGVLIGQ YAKAALGGKT PVIATLDLFP GHPVGAQRHN GFLQGYGLKS 
FDAKNNELAK PAEVVCMADS FGDRAKGQTG MENCLQKNPN INVVYTINEP AAAGAYNALK 
AAGKEKDVLI VSVDGGCDGI KDASGGKIAA TSQQYPLRMA SMGVEAGVEY AKTGKKVSGY 
TDTGVTLIAA KSIAGVDSKD AKTGLDLCWG KK