Gene Lcho_2155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2155 
Symbol 
ID6161453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2358096 
End bp2358740 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content73% 
IMG OID641664923 
ProductABC transporter-related protein 
Protein accessionYP_001791186 
Protein GI171058837 
COG category[R] General function prediction only 
COG ID[COG4136] ABC-type uncharacterized transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000406105 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGACATTGC CACTCCACCT CGACAACGTG CAGATCCGGC TCGGCGAGCG CGTGCTGCTC 
GGCCCGATCG GCGCCCGGAT CGAGCCCGGC GAGTGCCTGA CGGTGATGGG CCCGAGCGGC 
TGCGGCAAGT CGACCTTGCT GGCCTTCGTG GCCGGCACGC TCGACCCGGC GTTCAGCGCG 
AGCGGGCACG TGCGCATCGG CGCGCACGAC CTGACCGGCG TGCCGCCCGA GCGGCGCCGC 
ATCGGCATCC TGTTCCAGGA CGACCTGCTG TTTCCGCACC TGTCGGTGGC CGGCAATCTC 
GGTTTTGCGC TGCCGGCCGA GGTGCGGCCC AAGGCCGTGC GGCGCCGGCG CATCGAGCAG 
GCGCTGGCCG ACGCCGGCCT GGCCGGGTTT GCCGATCGCG ACCCGGCGAC GCTGTCGGGC 
GGCCAGCGCG CCCGCGTCGC GCTGCTGCGC AGCCTGCTCG CCGAGCCCGC CGCACTGCTG 
CTCGACGAAC CGTTCGGCAA GCTCGATGCG CAGCTGCGCG ACGATTTCCG GCGCTTCGTC 
TTCGATCACG TGCGCGCGAG CGGTCTGCCG ACCCTGCTCG TCAGCCACGA CGCCGCCGAT 
GCCGCTGCCG CAGGCGCGGC GGTGATCCAA TTGCCTCAGA CATGA
 
Protein sequence
MTLPLHLDNV QIRLGERVLL GPIGARIEPG ECLTVMGPSG CGKSTLLAFV AGTLDPAFSA 
SGHVRIGAHD LTGVPPERRR IGILFQDDLL FPHLSVAGNL GFALPAEVRP KAVRRRRIEQ 
ALADAGLAGF ADRDPATLSG GQRARVALLR SLLAEPAALL LDEPFGKLDA QLRDDFRRFV 
FDHVRASGLP TLLVSHDAAD AAAAGAAVIQ LPQT