Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2102 |
Symbol | |
ID | 6161422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2298079 |
End bp | 2299149 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664871 |
Product | ABC transporter-related protein |
Protein accession | YP_001791134 |
Protein GI | 171058785 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTACCTGC ATCTCGACCA GATCAGTGTC CAGTACGCCG CAGCGGCCCG CCCGGCGGTC CAGCATGTCT CGCTGGGCTT GCGGCGCGGC CAGGTCGGCG CGTTGATCGG CCCATCGGGC TGCGGCAAGA CCTCGCTGCT GCGCGCGGTG GCCGGGCTGG AGCGGCTGAA GTCCGGCAAG GTGGTGCTGG ATCAGCGCAC AGTCAGCGAT GCCGCGCTGG GCGTGCACGT CGACGCCGAG GCGCGCCGCA TCGGCATGGT GTTCCAGGAC TACGCGCTGT TCCCGCACAT GACGGTGGCG CAGAACATCG CCTTCGGCCT GCACGGCCAG TCGGCTGCGG CGCAGCGCGA GCGCGTGGCG CAGATGCTCG ACCTGGTCGG CCTGGGCGGG GCGGCCAAGC GTTATCCGCA TCAGCTCTCG GGCGGTCAGC AGCAGCGCAT CGCGCTGGCG CGGGCGCTGG CGCCGCAGCC CAGCCTGCTG CTGATGGACG AGCCGTTCTC GAGCCTCGAC ATCGACCTGC GCGAGCGCCT GGCGCAGGAG GTGCGCGCGA TCCTGAAGCA GACCGGCACG ACGGCCCTGT TCGTCACCCA CGACCAGCTC GAGGCCTTTG CCGTGGCCGA CGTGATCGGC GTGATGAACC ACGGCCAGCT CGAACAGTGG GACGAGGCCT ACGCGCTCTA CCACCGGCCG GCGACGCGGT TCGTGGCGAG CTTTGTCGGG CACGGCGTGT TCGCCCAGGC CGAACTGGTG GTCGGCGCCG ACGGCCCGCA GGTGCGCACG CCGCTGGGCC TGCTGTCGGA CCCGATCGAA TGCCCGCTGC CGGGCAACGA CGGCTTGTGC GAGGTGCTGC TGCGCGCCGA CGACATCGTG CACGACGACG ACAGCCCGGT GCGGGCACAG ATCCAGGCCA AGGCGTTCCG CGGCTCGGAG TTTCTCTACA CCCTGAAACT CGCCAGCGGC GAGCAGGTTC TGGCCCATGT GCCATCGCAT CACGACCACG CGATCGGCGA GTGGATCGGC GTGCGCGCCG AGATGGATCA CGTGGTGACG TTCCCGCGGC TGGTGGCCTG A
|
Protein sequence | MYLHLDQISV QYAAAARPAV QHVSLGLRRG QVGALIGPSG CGKTSLLRAV AGLERLKSGK VVLDQRTVSD AALGVHVDAE ARRIGMVFQD YALFPHMTVA QNIAFGLHGQ SAAAQRERVA QMLDLVGLGG AAKRYPHQLS GGQQQRIALA RALAPQPSLL LMDEPFSSLD IDLRERLAQE VRAILKQTGT TALFVTHDQL EAFAVADVIG VMNHGQLEQW DEAYALYHRP ATRFVASFVG HGVFAQAELV VGADGPQVRT PLGLLSDPIE CPLPGNDGLC EVLLRADDIV HDDDSPVRAQ IQAKAFRGSE FLYTLKLASG EQVLAHVPSH HDHAIGEWIG VRAEMDHVVT FPRLVA
|
| |