| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1980 |
|---|
| Symbol | |
|---|
| ID | 6163939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2147864 |
|---|
| End bp | 2148247 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641664749 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001791012 |
|---|
| Protein GI | 171058663 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00382946 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTT TCACCAAGAT CAGCCTCGTC ACCGGCGCCG ACGGCCGCGC CCATTGGGCC
GAATCGAGCC TCGCGCTGAG CGAAGGCAAG CCGCAATCGC GCCTGTCGCC CTTGCTGCCG
AGCGGCGGCT ATCAGCTGCG CGAGAGCCCG GTCGGTTTTC GCAGCGATTT CCATTGCACC
GGCGAGCCGC AGTGGGTGTT CATCATCGGT GGCGTGATGG AGATCGGCCT GCAGGACGGC
AGCAAGCGCG TCTTCCGGCC TGGCGATCAC TTCTATTCGG CCGACGTGTT GCCCGCCGGC
GCGGTGTTCG ACCCGGCCCT GCACGGCCAC TGCAGCCGCC AGGTGGGCGA CGAGCCGCTG
AAGACCCTGT TCGTGCGTGG CTGA
|
|---|
| Protein sequence | MSVFTKISLV TGADGRAHWA ESSLALSEGK PQSRLSPLLP SGGYQLRESP VGFRSDFHCT
GEPQWVFIIG GVMEIGLQDG SKRVFRPGDH FYSADVLPAG AVFDPALHGH CSRQVGDEPL
KTLFVRG
|
|---|
| |