| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1858 |
|---|
| Symbol | |
|---|
| ID | 6163335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2008665 |
|---|
| End bp | 2009888 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641664620 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790890 |
|---|
| Protein GI | 171058541 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCC CGCCCCCGTT CCTGCGTCGC GCCGCCCTGG CCGCTGCCTG CTTCAGTGCC
ACGGCCCCGA CACTGGCTCA CGACCTGAGC CAGGATCCCC TGCCCGCAAC CCCCGGCTGG
CGCATCGGCG CCGCGGCGGC GGTGACGTCG ATGAGCGCCA GCGAGCGCCT GCCGGCCGCA
CGTCATCCCG GCCTGCCCGG CAGCGGCCAG ACCGCCGCCG ACCGCAGCGG CCCGGGCCTG
GAGCACGCCA CGCTGGAAGC GGCGCTGGCC TTCGGCCAGC GGCAGGGCGC GGTGCTGGCG
ATCGGCAAGC ACGGCAGCGA CCGCGTGCAC ACCGAGGCCG CCCGGCTCGA CAGCCGCTGG
CAGATCGGCC TGGACCGGCT GTCGGTGCAG CTGGGCCGCG ACCGCGTGCC GATGGGACCG
GTGCTGACCG GCGCCGGCCA CTTCGACCGC TACGCGCTGG CGCCGCTGGC CAAGCGCCTG
GTCCTCAACG ACGACTGGAT CTCCGACGGC CTGAACCTGC GCTGGGAGCG CGGCGTGGCC
GAAGGGCTGC AGAGCGTCGA CGCCGGCCTC TGGCGCGCCC GCACCTGGCC CGGCGGCCTG
GACGGCCGGC TGGCACCGGC GGTCCATCTC GGCGGCAGCT GGGGCGACTG GAACCTGAGC
GGCTTCGCCG CGTCGCTGGC ACCCCGGGCC CGCGGCACGC CCTCGGCCGC CGCCGATGCG
CCGCACACCC ACGGCCAGCC CGACTGCCGC CGCAGCCTGG CCGCGGTGGC CTGCTTCGAC
GGCCAGACCC GGCTGCTCGG CGGCAGCCTG ATGTGGGACG GCCACGACAG CGGCTGGATC
GTCACCGCCG CCGGCCTGCT GCAGCGCGAC CGCGGCACGC TGGCGGCGCA ACTGGGCATC
ACCGACTACC GCGGCACCAC CCGCGCCGGC TGGCTCGACG TGCAGCGCCT GCTCGGCCAG
GGCTGGATCG TGGGCCTGCG CGCCGAGCGG GCCAGCGCCA CGCACCGCCT GGTCGGCCCG
GGCGCGACCC TGGTCAGCGC CGACGCCGGC CTGGACGGCA ACCACCCGAT CACCCGGCTG
GCCAGCGCGC TCACCTGGGA ACCGGGCGGC GGCTGGCTGC TGGGCCTCGA GGCCGGCACC
GAACGCAGCG CGCTGCCGAC CAACCGCTGG ATCGGCCTGC GCGCCGCCTG GTCGGCGCCG
GAACTGCTGC GCGGGGACTG GTGA
|
|---|
| Protein sequence | MPIPPPFLRR AALAAACFSA TAPTLAHDLS QDPLPATPGW RIGAAAAVTS MSASERLPAA
RHPGLPGSGQ TAADRSGPGL EHATLEAALA FGQRQGAVLA IGKHGSDRVH TEAARLDSRW
QIGLDRLSVQ LGRDRVPMGP VLTGAGHFDR YALAPLAKRL VLNDDWISDG LNLRWERGVA
EGLQSVDAGL WRARTWPGGL DGRLAPAVHL GGSWGDWNLS GFAASLAPRA RGTPSAAADA
PHTHGQPDCR RSLAAVACFD GQTRLLGGSL MWDGHDSGWI VTAAGLLQRD RGTLAAQLGI
TDYRGTTRAG WLDVQRLLGQ GWIVGLRAER ASATHRLVGP GATLVSADAG LDGNHPITRL
ASALTWEPGG GWLLGLEAGT ERSALPTNRW IGLRAAWSAP ELLRGDW
|
|---|
| |