| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1857 |
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| Symbol | |
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| ID | 6163334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2007067 |
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| End bp | 2008539 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664619 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001790889 |
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| Protein GI | 171058540 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCCG TCGATCCCCT CCACCTCGCC GACCAGGACC TCGCCCAGAT GTTCGAGCTC
GCGCCGGTGT CGCTGTGGCT GGAGGACTTC AGCGGGCTGG CCGCGCTGTT CGAGCGCTGG
CGGGCCGAGG GCGTGCGCGA CCTGCGGGCA CATCTGCTGG CCGATCGCTC CCGCATCACC
CAGTGCACCC GCCAGCTCAA GGTGCTGAAG GTGAACCGCC GCACCCTGGA GCTGTTCGGC
GCCGCCGACC TGCCCACCCT GCTGGCCGGC CTGGACCGGG TGTTCCGCGA CGACATGCTC
GAGCGCCATG TGGAAGAGCT GGTGCAGCTG TGGAGCGGTG CGCTGGCCTA TGCCAGCCAG
AGCGTCAACT ACACGCTCGA CGGCCGCCGG CTCGACGTGG CGCTGCAGGT GCGGGTGCTG
CCCGGCCACG AGGGGCGCTG GGACCGGGTG CTGCTGTCGC TGGAGGACAT CAGCGCGCGC
GAGCGGGCTC GCCAGGAGTT GCAGCGCAGC GAACGCTACG CCGAAGGCCT GTTCCAGCAT
TCGCCGGTCT CGCTGTGGGT GGAGGACTTC TCCGGCGTGA AGCGGCTGAT CGACGAGGTG
CGGCAGCAGG GCATCGTCGA CTTCCGCGTC TTCACCGACG TGCACCCCGA ATTCGTCGAA
CGCTGCATGG CCGAGATCCG GGTGGTCGAC GTCAACCGCC AGACGCTGAC GATGTTCCGC
GCGGCGGACA AGCCGACCCT GCTCAGGCGC CTGCCCGACG TCTTCCGCGA CGAGATGCGC
CGGCCCTTCA CCGAGCAGCT GATCGAGCTG TGGGCCGGCA AGCTCTACCA GCAGCGCGAG
ACGGTGAACT ACGCGCTCGA CGGCGAAGCG CTGCACGTGC ACCTGCAGTT CGCGGTGCTG
CCCGGGCACG AGGACGACTG GTCGCTGGTG CAGGTGTCGC TGACCGACAT CACCGCCCGG
CGCAAGGCCG AGGCCTACCT GGAGTTCCTC GGCAAGCACG ACGTGCTGAC CAAGCTGCGC
AACCGCTCCT ACTTCGACGA CGAACTGCAC CGGCTGGAGC GCAAGGCCAG CCATCCGGTG
GCGGTGATGT CGATCGACCT GAACGGCCTC AAGCAGGTCA ACGACGAATT CGGCCACCGC
GCCGGCGACA CGCTGCTGCG CCGTGCCGGC GAGGTGCTGG CCAAGGCGGT GGAGCCCCCG
GCCACGGTGG CGCGCATCGG CGGTGACGAG TTCGCCGTGC TGCTGCCGAT GACCGAGTCG
GCGGCGGCCG ATCAGGTGGC GGCGCAGATC CAGGCCCTGG TCGCGCTGAA CAACCAGTTC
CACGGCGGCG ACCCGCTGCA ACTGGCCATC GGCGTGGCGA TCTCCCAGCC CGGCGAGCGC
CTGGAAGCCA CCCTGCACCG CGCCGACAAG CTCATGTACG AGCAGAAGCA GGCCTTCTAC
GGCCAGGCCG ACCACGAACG GCGACGGGTC TGA
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| Protein sequence | MTPVDPLHLA DQDLAQMFEL APVSLWLEDF SGLAALFERW RAEGVRDLRA HLLADRSRIT
QCTRQLKVLK VNRRTLELFG AADLPTLLAG LDRVFRDDML ERHVEELVQL WSGALAYASQ
SVNYTLDGRR LDVALQVRVL PGHEGRWDRV LLSLEDISAR ERARQELQRS ERYAEGLFQH
SPVSLWVEDF SGVKRLIDEV RQQGIVDFRV FTDVHPEFVE RCMAEIRVVD VNRQTLTMFR
AADKPTLLRR LPDVFRDEMR RPFTEQLIEL WAGKLYQQRE TVNYALDGEA LHVHLQFAVL
PGHEDDWSLV QVSLTDITAR RKAEAYLEFL GKHDVLTKLR NRSYFDDELH RLERKASHPV
AVMSIDLNGL KQVNDEFGHR AGDTLLRRAG EVLAKAVEPP ATVARIGGDE FAVLLPMTES
AAADQVAAQI QALVALNNQF HGGDPLQLAI GVAISQPGER LEATLHRADK LMYEQKQAFY
GQADHERRRV
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