| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1801 |
|---|
| Symbol | |
|---|
| ID | 6163440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1943425 |
|---|
| End bp | 1944420 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641664563 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790833 |
|---|
| Protein GI | 171058484 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00000114766 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATGA TGAATCGCCG CCGCGTGCTC GGCTTGATGG GTGCGGCGGC CTTTGCGCCC
GCCAGTGCGC GCGTGATGGC GCAGGCCAGC GCGCCGAGCG ACCCGTTTCC GAGCCGCCCG
ATCACGCTGT GGGTGCCGTG GCCGGCCGGC GGCGCCACCG ACCTGACGAT GCGCCTGCTC
GCCGAACTCG CCAGCCAGCG CCTGGGCCAG CGCGTGCTGA TCGAAAACCG CGCCGGCGCC
GGCGGCACGC TGGCCATGCC GGTGCTGCAG CAGGCCGCGC CCGACGGCTA CACCATCGCC
CAGCTGCCGC AGCCCGCGCT GCGCGCGCCG CACATCCAAC GTCTGCTGTG GGATCCGATC
CGCGACACCA CGCCGATCAT CCAGCTCACC GGCGTGACCT TCGGCATCGT CGTGCCGGCG
GCCAGCGCGC TGCACGGCGT CGACGACGTG TTCGCCTACG CCCGCGCCAA CCCGGGCCGC
ATCACCATCG CCACCAACGG CGTGGGCACC ACCCCGCACG TGGTGATGGA CGAACTGTTC
GCGCGCCGCG GGCTGACCTA CGTGCACGTG CCGTACAAGG GCACCTCCGA GCAGATGCTG
GCGGTGTCGT CCGGGCAGGT GATGGTGGGT GTCAATTCCA ACGGCTTCGC GCCCTTCGTC
GACAACGGCG CCCTGCGCCT GCTGGCCACC TTCGGCGAGC ACCGCACCAA GCGCTGGCCG
CAGGTGCCCA CGCTCAAGGA ACTCGGCCAC GGCATCGTCG CCACCTCGCC CTACGGTCTG
GTCGGCCCGA GCGGCATGGC GCCGGCGGTG GTCAAGGTGC TGCACGACGC CTTCCGCAGC
GCCATGAACG ACCCGGCACA TGTGGCCGAA CTGGCCAAGT ACGACCAGAC GCTCGACTAT
CTCGGCCCCG AGGACTACGG TCGCGCGCTG CGCGAGGCCT TTGCGGCCGA GAAGCGCACC
GTCGAGCGCC TCGGCCTGGC CAAGGGCGGC GGCTGA
|
|---|
| Protein sequence | MAMMNRRRVL GLMGAAAFAP ASARVMAQAS APSDPFPSRP ITLWVPWPAG GATDLTMRLL
AELASQRLGQ RVLIENRAGA GGTLAMPVLQ QAAPDGYTIA QLPQPALRAP HIQRLLWDPI
RDTTPIIQLT GVTFGIVVPA ASALHGVDDV FAYARANPGR ITIATNGVGT TPHVVMDELF
ARRGLTYVHV PYKGTSEQML AVSSGQVMVG VNSNGFAPFV DNGALRLLAT FGEHRTKRWP
QVPTLKELGH GIVATSPYGL VGPSGMAPAV VKVLHDAFRS AMNDPAHVAE LAKYDQTLDY
LGPEDYGRAL REAFAAEKRT VERLGLAKGG G
|
|---|
| |