| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1778 |
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| Symbol | |
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| ID | 6162816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1919848 |
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| End bp | 1922067 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641664540 |
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| Product | exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_001790810 |
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| Protein GI | 171058461 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000000685942 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCCTC ATGTGCCCGA TGGTCAGGTC GATCTGTTCG GCCCGGTGTC CGGCCAATTG
CCTGGCCATC CGACGGGCGA GCCGGCCGAG CCGGGGGATG CCCCGTCACC GTCCGCCGTG
CTGGCCGAAC TCGCTGCCTG GGCCGAAGCC GGCTGGCTGC GCGCGCTCGA CCTGTCGCTG
GCGCGCCTGC TGGTGCAGCA ATGCCCGGAT GCCTCGGCGC ATCTGGCGCT GGCCGCCGCG
CTGCTGGCGC ACAACGAGGG CCGCGGCCAC ACCTGCCTGC CGCTGGACGA ATGGCTGGCG
TCGGTCGACG AGGCCGCCGC GCCCACCGCC CCCGGCGGGT CGCACGCCCG GCCCCTCACC
GAGCCGTGGC TGGATGGCCC GGCCGATGCG CAGGCCGCAC TCGCCCGACA GCTGCGTGCG
CTCGGCACCG ATCCCGGCGA GTGGCGCGCC GCCTTGCTGT GCAGCGGCGC GGTGGCCGCC
GCGGGCGAGA TCGTGGCGAC CGGCCTGGCG AGCCCGCTGA TCCTGTCCGG CAGCCGGCTC
TACCTGCGCC GCCATTTCCG CGACGAGCAG GCCGTGGCGC AGGCGGTGGT CGGGCGCGCC
GCCGCCGCGA TGCCGGTGGC CGAAGGGGCG CCGCAGGCGC AGCCGCATGC GGGCACCGAG
CCACCGGACG CCGCGCAGGT GCGCCTGTGG CTCGACCGCC TGTTCGGCGG TCCGCCCGCG
CCGGATCGTT TCGACTGGCA GCGCAGCGCC TGCGCGATCG CGTTGCGCGG CCGGCTGGCG
CTGATCACCG GCGGGCCGGG CACCGGCAAG ACCTACACCG TGGCGCGGCT GCTGGCGCTG
GTGATGGCGG TGCATCCGCA GCCGCAGGCG CTGCGCATCG CGCTGGCGGC GCCCACCGGC
AAGGCGGCGG CGCGGCTCAA GCAGTCGATC GACAGCGCGC TGCAGCAGCT GGCCGCGGCG
CTGCCGGGGG CGCTCGACTG GGGTCTGCTG CAGCAGCGCC TGTCGCAGTC GCTGACGCTG
CACAAGCTGC TGGGTGCGCG GCCGGACACC CGCCGTTTCG GCCGCGATGC GCGCCATCCG
CTCGAGGTCG ACCTGCTGGT GGTGGACGAG GCGTCGATGG TCCACCTCGA GATGATGGCC
GCGCTGCTGG CCGCGCTGCC GCCGGCGTCA CGGCTGGTGC TGCTGGGCGA CAAGGACCAG
CTGGCGTCGG TCGAGGCCGG TGCGGTGCTG GGCGACCTGT GTGTCGACGC CGCCGCGGGC
GGTTACGACG AGGACACCGC CGCCTGGATC CAGGCCTGTG TCGGCCAGGC GCTGCCGCAG
CCGTTCCGCT GCGGCCAGCC GGGCCCGCTG GCGCAGCAGA CCGTGATGCT GCGCGAGAGC
CGGCGCTTCG AGGGCCCGAT CGGCGCACTC GCGCTGGCGG TCAATGCCGG TGATGTGACC
GCAGCGCGCC GGCTGCTCGG GCTGGGCGTG CCGGCGCCGG CCGACGACGG CAGCCTGCGC
GCGCCGACGG GTGTCACGCC CGCTGCGGTC TGTGATCTGG CCGTGCACGG ACGCGCCGGC
AACGACGCTT CGGCGACCGG CTTCGTCAAC TATCTGCGCC TGCTGCGCGA GGGCGCGCCC
AGGCGCGCCG ACGGGCCGAG TCCGGACGGC GTGCGAGCGG TTCTGCAGGC CTTCGAGCGT
TGCCGGGTGC TGTGCGCGGT GCGCGAGGGC GAGTGGGGCG TCGCCGGGCT GAACGCGGCG
ATCGAGCGCC AGCTGCGCCA GCAGGGCTGG ATCGCGCGCC AGGGCGAGTG GTACGAGGGC
CGGCCGGTGA TGGTGACGCG CAACGATCCG GCGCTCGGTG TCTTCAACGG CGACATCGGC
CTGGCGCTGC GCGGGCCGGC GCAGCCGGGG GGGGCCCAGG GGGCGGGCGG CCCGTTGCGG
GTCTGGTTTC TCGATGGCGA GCAGCCGCGC TCGGTGCTGG CCAGCCGGCT CGCCGCGGTC
GAGACGGCGT ACGCGATGAC GGTGCACAAG TCGCAGGGCT CGGAGTTCGA GCACACGGTG
CTGGTGCTGC CGCCGCACGC CAACCCGGTG CTGACGCGCG AGCTGGTCTA CACCGGCATC
ACGCGGGCGC GGCGGGCGTT CACGCTGGTC GCGCCCGAGC CGGCGGTGTT CGACCTGGCG
TTGCAGCGGC GCACCCGGCG CGCCAGCGGC CTGCCCGATC TGCTGGCGGC CGGCGCCTGA
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| Protein sequence | MSPHVPDGQV DLFGPVSGQL PGHPTGEPAE PGDAPSPSAV LAELAAWAEA GWLRALDLSL
ARLLVQQCPD ASAHLALAAA LLAHNEGRGH TCLPLDEWLA SVDEAAAPTA PGGSHARPLT
EPWLDGPADA QAALARQLRA LGTDPGEWRA ALLCSGAVAA AGEIVATGLA SPLILSGSRL
YLRRHFRDEQ AVAQAVVGRA AAAMPVAEGA PQAQPHAGTE PPDAAQVRLW LDRLFGGPPA
PDRFDWQRSA CAIALRGRLA LITGGPGTGK TYTVARLLAL VMAVHPQPQA LRIALAAPTG
KAAARLKQSI DSALQQLAAA LPGALDWGLL QQRLSQSLTL HKLLGARPDT RRFGRDARHP
LEVDLLVVDE ASMVHLEMMA ALLAALPPAS RLVLLGDKDQ LASVEAGAVL GDLCVDAAAG
GYDEDTAAWI QACVGQALPQ PFRCGQPGPL AQQTVMLRES RRFEGPIGAL ALAVNAGDVT
AARRLLGLGV PAPADDGSLR APTGVTPAAV CDLAVHGRAG NDASATGFVN YLRLLREGAP
RRADGPSPDG VRAVLQAFER CRVLCAVREG EWGVAGLNAA IERQLRQQGW IARQGEWYEG
RPVMVTRNDP ALGVFNGDIG LALRGPAQPG GAQGAGGPLR VWFLDGEQPR SVLASRLAAV
ETAYAMTVHK SQGSEFEHTV LVLPPHANPV LTRELVYTGI TRARRAFTLV APEPAVFDLA
LQRRTRRASG LPDLLAAGA
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