| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1734 |
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| Symbol | |
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| ID | 6161234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1850963 |
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| End bp | 1851910 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664494 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001790766 |
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| Protein GI | 171058417 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000338727 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCATCC ACACCACCCG CATCGCGCGC CTGGCCGAAC GGGCCCGCGC GCTGGGCGGG
CGCAACAGCG TGATCGGCGT GCCCTATGTG TGGCTGCTGA TCTTCTTCCT GCTGCCGTTC
CTGATCCTGC TGCGCATCAG CCTGTCGTCG ATGGACGGCG CGCTGGTCAC CGAACTGGTC
CACTGGACCG AGACCGAGCT GACGCTGACC GTGCGGCTGG GCAACTACCA GCTGCTGTTC
ACCGACGACC TCTACATCAG CACCTACGGC CTGTCGCTGC TGTACGCCGG CGTCACCACG
CTGGTGTGCC TGGCGATCGG CTACCCGTTC GCCTACTTCA TGGCGCGCTC GGCCGCATCG
CTGCAGCCGC TGCTGCTGAT GGGCGTGATG CTGCCGTTCT GGACCAGCTT CCTGCTGCGC
GTCTACGCCT GGAAGGGCCT GCTCGACGCC GACACCGGCT GGGTCGGCAC GGCGCTCAAG
GCGCTGGGCA TCGACCAGGT GCTGTTCGCG CTCGGCGCCA TCCCGGCCGA GGGGCAGTTC
ATGTACAGCC CGTTCTCGCT GGTGATCGGC ATGGTCTACA CCTATCTGCC GTTCATGGTG
CTGCCGCTGT ACGGCACGCT GTCCAAGCTC GACATCCGCC TGCTCGAAGC CGCGCAGGAC
CTGGGCGCGA CGCCCTGGCA GACCTTCTGG CGCGTGACGG TGCCGCTGTC GCGCGCGGGC
ATCGTCGCCG GCGCCATGCT GGTGTTCATC CCGTGCGTGG GTGAATACGT GATCCCCGAA
CTGCTCGGCG GCCCCGAGAC GCTGATGATC GGCCGCGTGC TGTGGGACGA GTTCTTCGCC
AACAACGACT GGCCGATGGC GTCGAGCGTG GCGGTGGTGA TGGTCATGAT GATCCTGGTG
CCGCTGGCCA TCTTCAACCG CAGCCAGGCG CAGGCGACGC ACAAATGA
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| Protein sequence | MSIHTTRIAR LAERARALGG RNSVIGVPYV WLLIFFLLPF LILLRISLSS MDGALVTELV
HWTETELTLT VRLGNYQLLF TDDLYISTYG LSLLYAGVTT LVCLAIGYPF AYFMARSAAS
LQPLLLMGVM LPFWTSFLLR VYAWKGLLDA DTGWVGTALK ALGIDQVLFA LGAIPAEGQF
MYSPFSLVIG MVYTYLPFMV LPLYGTLSKL DIRLLEAAQD LGATPWQTFW RVTVPLSRAG
IVAGAMLVFI PCVGEYVIPE LLGGPETLMI GRVLWDEFFA NNDWPMASSV AVVMVMMILV
PLAIFNRSQA QATHK
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