| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1715 |
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| Symbol | |
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| ID | 6162809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1832510 |
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| End bp | 1833442 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641664475 |
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| Product | patatin |
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| Protein accession | YP_001790747 |
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| Protein GI | 171058398 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000000010772 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGATCCTGC GGGACCGGCT GCGCTGCCCT GAACCGGCGC CCAGCCGGCG GCAGCTGCTG
CTGGGCGCTG CCACCGGCCT GCTGCTGCCG GGCTGCACGC TGAACCCGGA TCGAGACCAC
GACGACGCCG ACGCGCCCAC CAGCGAGGTG CCGCTGTTCG CCGGCCCGGC CTCGTCGCGG
CCGATCACGG CCTGGGTGCT GAGCTCGGGC GGCCCGCGCG GCTTCGTGCA CGTGGGCGTG
CTCAAGGCGC TCGACGAGCT GGGCCTGCGG CCCGACCTGA TCGTCGGCGC GTCGGTCGGC
GCCTTCATCG GCGTGCTGCG TGCGGGCGGC CGCAGCGGGC GCGAGATCGA GGCGCTGGCG
CTCGAACTGC GGCCGTGGTG GCTGGCGCGC CTGGCGGTGG GCACGCCCGA ACACCTCAGC
GGCGCGCCGC TGGCCGACTA CGTGCGCAGC CAGACCGGCG AGCACCTGCT CGAACGCCTG
CCGATCCCGG CGGTGTGCGT GGCCACGCGC ATGAGCGACG GCGTGGCGGT CGGTTTCAAC
CGCGGCGACA TCGGCCTGGC GGTGCAGGCG GCCAGCGCGA TCGAAGGCCG TTTCGCGCCG
GTGCGCATCC GCGGCCAGCG TTACCTCGAC GCCGACCAGA CCCTGCCGCT GCCGGTGCGA
ATGGCGCGCG CCCTGGGCGC CACCCGGGTG CTGGCGGTGG ACGCCTCGGC GCACGAGGAC
CGGGCGCCCG CCGGCGCCGA ACACTACCGC GTGGGCGATC TGCACAAACG CGCCCTGACC
GCGCCCGACG CCCGCGCCGC CGACGTGCTG CTGCACCCCG ACTTCGGCTA CTGGGTCAGC
CTGTCACGCG AGTTCCGCGA ACGCGCGATC GCCGCCGGCT ACCGCGCCAC GCTGGCCGAC
GCGGCGCGCA TCCGGGCGCT GCACGGCGCC TGA
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| Protein sequence | MILRDRLRCP EPAPSRRQLL LGAATGLLLP GCTLNPDRDH DDADAPTSEV PLFAGPASSR
PITAWVLSSG GPRGFVHVGV LKALDELGLR PDLIVGASVG AFIGVLRAGG RSGREIEALA
LELRPWWLAR LAVGTPEHLS GAPLADYVRS QTGEHLLERL PIPAVCVATR MSDGVAVGFN
RGDIGLAVQA ASAIEGRFAP VRIRGQRYLD ADQTLPLPVR MARALGATRV LAVDASAHED
RAPAGAEHYR VGDLHKRALT APDARAADVL LHPDFGYWVS LSREFRERAI AAGYRATLAD
AARIRALHGA
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