Gene Lcho_1687 details

Gene Information

• Locus tag: Lcho_1687
• ID: 6162482
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1799739
• End bp: 1800248
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641664442
• Product: colicin V production protein
• Protein accession: YP_001790719
• Protein GI: 171058370
• COG category: [R] General function prediction only
• COG ID: [COG1286] Uncharacterized membrane protein, required for colicin V production

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCGGGTA TCGGGTGGAT CGATCTGTTC GTGATCGTGG TCGGGCTGCT GTCGGTGCTG 
CTCGGCGTCT TGCGCGGGCT GGTGCTGGAG GTGATGTCGG TGATCGGCTG GCTGATCGCC 
TGGCTGGTGG CGCAGGCCTG GGCTGCGCCG GTCGGGCTGA CGGTCGCCTG GATGCCGATG 
AGTCCGGTGG CCCGCCAGGC GCTGGGGTTC GTGCTGTGCT TCGTGGTGGT CCTGTTTGCG 
TGGCGCCTGC TGGCCTGGCT GGTCAGCCAG GTGCTCAAGG CCACGCCGCT GGCACCGGTC 
GATCGCCTGC TCGGTGGCGT CTTCGGTGTC CTGAGGGCGG TGCTGATCGT GCTGGTGCTG 
GTGACGCTGG CCGGCCTGAC GCCCCTGGCA CGACAGCCGT TCTGGGCTGA ATCCCGCTCG 
GTGGCCGCGA CCGTGTGGCT GCTCGAGGGC ATCGCGCCAC TGCTGCCCAA GGACTGGACG 
ACACCCGTTC GCGGCGCTGG CCGCGGCTGA 

 

Protein sequence

MAGIGWIDLF VIVVGLLSVL LGVLRGLVLE VMSVIGWLIA WLVAQAWAAP VGLTVAWMPM 
SPVARQALGF VLCFVVVLFA WRLLAWLVSQ VLKATPLAPV DRLLGGVFGV LRAVLIVLVL 
VTLAGLTPLA RQPFWAESRS VAATVWLLEG IAPLLPKDWT TPVRGAGRG