Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1628 |
Symbol | |
ID | 6160960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1728624 |
End bp | 1731713 |
Gene Length | 3090 bp |
Protein Length | 1029 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641664382 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001790660 |
Protein GI | 171058311 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00663249 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCCCTGC CGCTTGCGCA GCCCGCCGCC GCGGCCTTGG TGGGCGACCG CCTGCCCTCG CCCTTGCGCG ACGAAGCCGA GCAAGTTCAG CGCCTGCTGG GCACGCTGAC CGGCGCGGCA GCCGCCGGCC CGCTCGACTG GAGCGCGGTG GTCGGCCGTG CCACGCCCTG GGTGGAAGCG GTGCGCGGCA CGCCGGCGCC GTTCTGGGCG CTGGAGTCGC TGCTGCACGA CTACCCGATC TCCAGCGCCG AGGGCCTGGC GCTGATGCGG CTGGCCGAGG CGCTGCTGCG GGTGCCCGAC ACCGCCACCG CGATCGCGCT GACCGCCGAC CAGCTCGGCC GTGGCGACTT CAGCGCGCAC GCGGCACACG CCGGCAGCGC GCACCCGCTG ATGGCCAGTC TGGCGGCGCG CTCGCTCGAT TTCTCGCGCA AGCTGCTGCC CGAAGCGGGG GGCGGTCAGC CCGGCCTGCT GCAGCGCCTG GGCGCGCAGA CCGTGGTGGC CGCCACCGTG CGCGCCATCC AGCTGCTGGG CAAGCAGTTC GTGCTGGGCC AGAGCATCGC CGAGGCGCTC GACATCGCCC GCGCCGCCAG CCGCAAGGAG CCCGGCCTGG TGCACAGCTT CGACATGCTC GGCGAAGGCG CCCGCACCGA TGCCGATGCG CGGCACTACC TGGCGGCCTA CCAGGGTGCG ATCGCAGCGA TCGCCAAGCC CGGTCGGGCG ACGTCACCGG AAAGCGCCGA CGGCATCTCG ATCAAGCTGT CGGCGCTCGA TGCGCGCTAC GAAGCGGCGC AGTCCGCCAG CGTGTTCAAG CGCCTGCTGC CGCGCCTGAT CGCGCTGGTC GACGCCGCGG CCGCCGCCAA CATCAACCTG ACGATCGACG CCGAGGAGAG CGAGCGGCTG GAGCTGTCGC TGCAGGTGCT CGACGCGCTG GCCGCACACG CTGCGCGCAC GCATCCGGAT TGGACCGGCC TGGGCCTGGC GGTGCAGGCC TACCAGACCC GCGCCAGCGA CACCGTCGCC GCCGTGGTGC AGATCGCCCG CCAGCACCAG CGCCGGCTGA TGGTGCGGCT GGTCAAGGGC GCGTACTGGG ACAGCGAGAT CAAGCGCGCC CAGGAACTGG GCCTCGCCGC CTACCCGGTG TTCACCGACA AGCGCCACAC CGATCTGAGC TACCTGGCCT GCGCGCGTGC GCTGCTGGCG GCGAGCGACT GCATCTACCC GCAGTTCGCC ACCCACAACG CCGCCACCAT CGCGGCGCTG CTGCAGATGG CGCGTGCGCC GGGGGCGCGC TTCGAACTTC AGCGCCTGCA CGGCATGGGC GAGGCGGTCT ACCGCGAAGT CTTGAAAGAC CTGCGCCGCA CGCCTGACGC ACCGCCGCTG CGCATCTACG CGCCGGTCGG CGAACACCGC GACCTGCTCG CCTATCTGGT GCGCCGGCTG CTGGAAAACG GCGCCAATTC GTCGTTCGTG CACCAGCTGG CCGACCCGAC GGTCGACGTC ATCACGCTGC TGACCTCGCC GCTGCACGCG CCGTCGGCCA GCAGCCTGCC GCTGCCGGTG GCGCTGTACG GCGCCGGCCG CGCCAACTCG GCCGGGCGCG ACCTGCACAT CGCCGCGCAC CGCCTGCCGA TGATCCAGAC GCTCGCCGAG CGCGGCCGCG TCGGTCTGCC GCCGGTGAGC GAGGCCAGCG TCGACCAGGC GCGCGAGGCC ATGCACGCGC TGCACGCCAG CCAGCCGGCC TGGAATGCCA CGCCGCTGGC GCACCGCTGC GCCGTGCTGC AGCGTGCGGC CGATGCGCTC GAAGCGCGCA TGGACGAGTT CGTCGCCCTG CTCGTGCACG AAGGCGGCAA GACGCTGGCC GACGGCGTTT CCGAGGTACG CGAGGCGGTC GACTTCTGCC GCTACTACGC CGAGCAGGCC GCCACCAAGC TGGCGCCGCA GACGCTGCCC GGCCCGACCG GCGAGAGCAA CGAGCTGCGC CTGCACGGCC GCGGCGCCTT CGTCTGCATC AGCCCGTGGA ACTTCCCGCT GGCGATCTTC GCCGGCCAGG TGGTGGCCGC GCTCGTCGCC GGCAACACCG TGGCGGCCAA GCCGGCCGAG CAGACACCGG CGGTGGCGAT GGCCTTCGTG CACCTGCTGA TCCAGGCCGG CCTGCCCGAG AACGCGATCG CGCTGCTGCA CGGCCCGGGC GAAACCGTCG GCGCCGCCCT GGTGGCGCAC ACGCGCTGCG CGGGCGTGTG TTTCACCGGC TCGACGCAGG TGGCCCGCGC GATCAACCGC GTGCTGGCCG AACGCGACGG CGCGATCGTG CCGCTGATCG CCGAGACCGG CGGGCTCAAC GCGATGGTGG TCGACTCGAG CGCGCTGCCC GAGCAGGTGG TCGATGCGGT CGTGCAGAGC GCCTTCCGCT CCGCCGGCCA GCGCTGCTCG GCGCTGCGGC TGCTGTGCGT GCACGACGAA GTGGCCGACA AGCTGCTCGA AATGCTGTCG GGCGCGATGG CCGAACTGGT GAGCGGCGAC CCGCGCGACG CGGCGCACAG CTGGGCCGTC GACATCGGCC CGGTGATCGA CGCCGAGGCG CACGCGAATC TCGCCCGCCA CGTGCGCCGG CTCGACGAGA GCGCCCGCCT GATCGCCCGC AGCGCGCTGC CGGATGCGCT GGCCGCCACC CACATCGCAC CGGTCGCCTA CGAGATCGCC GACATCGGCG CGATGCGCGA GGAAGTCTTC GGCCCGGTGC TGCACGTCCT GCGCTGGCGC GGCGACCCGG ACGCGCTGGT GGCGCAGATC AACGGCCTGG GCTACGGCCT GACGCTGGGC GTGCACACCC GCATCGACGG CCGCGCGCTG CGCATCGCCG AGCAGGCGCG GGTGGGCAAC GTCTACATCA ACCGCAACAT GATCGGCGCG GTGGTGGGCG TGCAGCCGTT CGGCGGCGAG GGGCTGTCGG GCACCGGGCC GAAAGCCGGC GGGCCGCACT ACCTGTACCG CTTCTGCGGC GAGCAGACGG TGACGATCAA CACCGCGGCG GCCGGCGGCA ACGCGACGCT GCTGGCGGGT ACGGCCGCTG CGAACACGCA TGCGAACTGA
|
Protein sequence | MPLPLAQPAA AALVGDRLPS PLRDEAEQVQ RLLGTLTGAA AAGPLDWSAV VGRATPWVEA VRGTPAPFWA LESLLHDYPI SSAEGLALMR LAEALLRVPD TATAIALTAD QLGRGDFSAH AAHAGSAHPL MASLAARSLD FSRKLLPEAG GGQPGLLQRL GAQTVVAATV RAIQLLGKQF VLGQSIAEAL DIARAASRKE PGLVHSFDML GEGARTDADA RHYLAAYQGA IAAIAKPGRA TSPESADGIS IKLSALDARY EAAQSASVFK RLLPRLIALV DAAAAANINL TIDAEESERL ELSLQVLDAL AAHAARTHPD WTGLGLAVQA YQTRASDTVA AVVQIARQHQ RRLMVRLVKG AYWDSEIKRA QELGLAAYPV FTDKRHTDLS YLACARALLA ASDCIYPQFA THNAATIAAL LQMARAPGAR FELQRLHGMG EAVYREVLKD LRRTPDAPPL RIYAPVGEHR DLLAYLVRRL LENGANSSFV HQLADPTVDV ITLLTSPLHA PSASSLPLPV ALYGAGRANS AGRDLHIAAH RLPMIQTLAE RGRVGLPPVS EASVDQAREA MHALHASQPA WNATPLAHRC AVLQRAADAL EARMDEFVAL LVHEGGKTLA DGVSEVREAV DFCRYYAEQA ATKLAPQTLP GPTGESNELR LHGRGAFVCI SPWNFPLAIF AGQVVAALVA GNTVAAKPAE QTPAVAMAFV HLLIQAGLPE NAIALLHGPG ETVGAALVAH TRCAGVCFTG STQVARAINR VLAERDGAIV PLIAETGGLN AMVVDSSALP EQVVDAVVQS AFRSAGQRCS ALRLLCVHDE VADKLLEMLS GAMAELVSGD PRDAAHSWAV DIGPVIDAEA HANLARHVRR LDESARLIAR SALPDALAAT HIAPVAYEIA DIGAMREEVF GPVLHVLRWR GDPDALVAQI NGLGYGLTLG VHTRIDGRAL RIAEQARVGN VYINRNMIGA VVGVQPFGGE GLSGTGPKAG GPHYLYRFCG EQTVTINTAA AGGNATLLAG TAAANTHAN
|
| |