| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1279 |
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| Symbol | |
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| ID | 6162531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1364049 |
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| End bp | 1365278 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641664033 |
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| Product | hypothetical protein |
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| Protein accession | YP_001790313 |
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| Protein GI | 171057964 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5621] Predicted secreted hydrolase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00000467326 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGCACCAC CCCGCAGTCA CGGCCCGACA CGAACACCGC CCACGCCGCC CGGCGATGCG
TGGCCCGGCG CCGGCCTGTC GCGCCGCGGC CTGCTCGGCG CGCTGCCGGC GCTGGCCTGG
AGCGGCGCGG CCGGTGCCGC CGCGCCGACC GCATCCACGC CGTTCGAACC GCGCGGCGTC
GCACCACGGC CGCTGGTCTT CCCGGCCGAC TTCGGCGCCC ACCCCGACAC CCGCATCGAG
TGGTGGTACG TGACCGGCTG GCTCGGCACG GCCGAGGCGC CGCGCTACGG TTTCCAGCTG
ACGTTCTTCC GCTCGCGCAC CGAGGTCGAT GCGCGCCACC CGAGCGCCTT CGCCGCCACG
CAGCTGCTGT TCGCCCATGC CGCACTGAGC GACGTCGGCC AGCGCCGCCA GCACCACGAC
CAGCGCATGG CGCGCGCCGG TTTCGGCCTG GCGCAGGCGG CAGTGGGCGA CACCGACGTG
CGCCTGCGCG ACTGGCCGCT GCAGCGCCGG GCCGGGGCGG CGGGCACATC GAGCATCTAC
CGCGCCGAAC TGCTCGCCGG CAGCCACGCC GGCCCGGCCT GGCAGCTCGC CCTGCAGCTC
GCCACCACCC AGCCGCTGCT GCTGCAGGGC GACGCCGGCT ACTCGCGCAA GGGCCCGCAG
CCAGGCCAGG CCAGCCACTA CTACAGCCAG CCTCAGCTCG ACGTGGCGGC ACGCCTGCAG
ATCGACGGCC GCAGCCTCGA TCTGGCGGGC CGCGCCTGGC TCGATCACGA ATGGAGCAAC
TCGGTGCTCG ACCCGAGCGC CGTGGGCTGG GACTGGATCG GCATCAACCT GTTCGACGGC
GGCGCGCTGA CCGCCTTCCG GCTGCGCCGC GCCGACGGCA GCACGCTGTG GGCCGGCGGC
TCGCTGCGCG GCCCTACCGG CTCGACCGGC GCCACGGGCA GCACCGCCGA GACGCGCAGC
TTCAAGCCCG ACGAGGTGCG ATTCACGCCG CTGCAGCGCT GGTCCAGCCC GGCCACCGCC
GCGACCTACC CGGTGCTGTG GCAGGTCGAC ACGCCGGCCG GCCGGCATCG GGTGCGCGCC
CTGTTCGAGG CCCAGGAGCT CGACAGCCGC GCCTCCACCG GCACGGTCTA CTGGGAAGGC
CTGAGCGAGC TGCTCGACGC GCAGGGCCGG CGCATCGGCC TGGGTTACCT CGAGATGACG
GGTTATGCGG GTCGGCTGGC GATGCCGTGA
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| Protein sequence | MAPPRSHGPT RTPPTPPGDA WPGAGLSRRG LLGALPALAW SGAAGAAAPT ASTPFEPRGV
APRPLVFPAD FGAHPDTRIE WWYVTGWLGT AEAPRYGFQL TFFRSRTEVD ARHPSAFAAT
QLLFAHAALS DVGQRRQHHD QRMARAGFGL AQAAVGDTDV RLRDWPLQRR AGAAGTSSIY
RAELLAGSHA GPAWQLALQL ATTQPLLLQG DAGYSRKGPQ PGQASHYYSQ PQLDVAARLQ
IDGRSLDLAG RAWLDHEWSN SVLDPSAVGW DWIGINLFDG GALTAFRLRR ADGSTLWAGG
SLRGPTGSTG ATGSTAETRS FKPDEVRFTP LQRWSSPATA ATYPVLWQVD TPAGRHRVRA
LFEAQELDSR ASTGTVYWEG LSELLDAQGR RIGLGYLEMT GYAGRLAMP
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