| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1273 |
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| Symbol | |
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| ID | 6162632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1358244 |
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| End bp | 1359359 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664027 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001790307 |
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| Protein GI | 171057958 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000032067 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGCCA AACGAGCGCT GAACGACGCG GGCGGGCCGA GCGCCGGGCC GCCCCAAGCC
GGCCTGCACC CCCGCGGGGG GTCGTCCGCC GTACCCGGCG GCGGGGGCCC TAACCAGCGC
GCCTGGGCGC GCTTCAGGCG CAACCGCATC GGGCTGGTGT CGCTGTGGCT GTTCATCGTG
ATGCTGGTGT TTTCGACCGC CGCCGAGCTG GTCAGCAACG ACCGGCCGCT GCTCGTGAGC
TTCAAGGGCG AGCTGAGTGC GCCGATGCTG CACAACCCGC CCGAGACCGC CTACGGCGGC
GATTTCGCCA CGCCGACCGA CTGGAAGGAC AGCTTCATCG TCGAGCGTTT CAAGCAGCCC
GACGCCTGGG CGCTGTTCAC GCTGAACCCG CATTCGGCCA CCTCGATCAA CTACTTCGAC
CCGCTGCCCA GCCCGATGCC GCCGAGCGAG CGCAACTGGC TGGGCACCGA CAGCGAGGGC
CGCGACATGG TGGCGCGGCT GCTCTACGGC TTTCGCATCA GCATCTGGTT CGCGCTGGCG
CTGACCGTGG TCGGCACGCT GCTCGGCGTG GCGGCCGGCG CGCTGCAAGG CTATTTCGGC
GGCCGGGTCG ATCTGGTCAC GCAGCGGCTG ATGGAGATCT GGGGCGCGGT GCCCGAGCTC
TACCTGCTGA TCATCTTCGC GTCGATCTTC GAGCCCTCGC TGCTGTTGCT GCTGATCCTG
CTGAGCCTGT GGGGCTGGAT GGGCCTCTCC GACTACGTGC GCGCCGAGTT CCTGCGCAAC
CGCAACCTCG AGTTCGTCAA GGCGGCGCGT GCGCTGGGCC TGTCCAACCG CCAGATCATC
TGGCGCCACG TGCTGCCCAA CTCGCTGACG CCCGTGATCA CCTTCCTGCC GTTTCGCATG
AGCGCGGCGA TCCTGGCGCT GACCTCGCTC GATTTCCTGG GCCTCGGCGT GCCGAGCTCG
ATGCCGTCGC TGGGCCAGCT GCTGCAGCAG GGCAAGGCCA ACCTCGACGC CTGGTGGATC
ATCGTGCCGA CCTTTCTCCT GCTGGTGCTG ACGATGCTGC TGCTCACCTT CATCGGCGAC
GCGCTGCGCG ACGCCTTCGA CACCCGCAAG TCATGA
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| Protein sequence | MTAKRALNDA GGPSAGPPQA GLHPRGGSSA VPGGGGPNQR AWARFRRNRI GLVSLWLFIV
MLVFSTAAEL VSNDRPLLVS FKGELSAPML HNPPETAYGG DFATPTDWKD SFIVERFKQP
DAWALFTLNP HSATSINYFD PLPSPMPPSE RNWLGTDSEG RDMVARLLYG FRISIWFALA
LTVVGTLLGV AAGALQGYFG GRVDLVTQRL MEIWGAVPEL YLLIIFASIF EPSLLLLLIL
LSLWGWMGLS DYVRAEFLRN RNLEFVKAAR ALGLSNRQII WRHVLPNSLT PVITFLPFRM
SAAILALTSL DFLGLGVPSS MPSLGQLLQQ GKANLDAWWI IVPTFLLLVL TMLLLTFIGD
ALRDAFDTRK S
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