Gene Lcho_1252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1252 
Symbol 
ID6161096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1340296 
End bp1340934 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content70% 
IMG OID641664006 
Productmethyltransferase type 11 
Protein accessionYP_001790286 
Protein GI171057937 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.000791929 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACAGA ATCCAACCCC TTCGTTCGAG GATCCGGCGG GCACCTGGAA CCGCCGCTTC 
GACCAGGACG ACTACCTGTT CGGCATCGAG CCCAACGAGT GGCTGCGCGA ACAGGCTCAC 
CACTGGCGGG CCGGGCAGCG GATCCTGAGC GTGGCCGACG GCGAGGGGCG CAACAGCGTC 
TGGCTTGCCG GGCAAGGCCT GCAGGTCGAC GCCTTCGACA TCGCCGAAAT CGGCGTGGCC 
AAGGCCCGCC GACTCGCCGC CAGCCGGGGC GTGGCAGTCG ACTTCACGGT GGCCGACTGC 
GACGGTTTCC CGTGGCCGCA GGCCACCTAC GACGGCGTGG CCGCGATCTT CGTGCAGTTC 
GCCGACCCGG CGCTGCGCGC GCGCCTGTTC GCGAACATGG CGGCCAGCCT GAAGCCCGGC 
GGCGTTCTGG TGCTGCTGGG CTACACACCC AGGCAGCTCG TGTACCGGAC CGGCGGGCCG 
CCTCTGGCGT CGCACCTGTA CACCGAAGCC ATGCTGCGCG AAGCCTTCGC GGAGATGGAC 
CTGCTCACGC TGCGCGAGTA CGACGCCGAA GTGGCCGAGG GCACCGGCCA CCGCGGACGG 
TCGGCCCTCA TCGGCCTGGT CGCCCGACGT CGTCAATGA
 
Protein sequence
MSQNPTPSFE DPAGTWNRRF DQDDYLFGIE PNEWLREQAH HWRAGQRILS VADGEGRNSV 
WLAGQGLQVD AFDIAEIGVA KARRLAASRG VAVDFTVADC DGFPWPQATY DGVAAIFVQF 
ADPALRARLF ANMAASLKPG GVLVLLGYTP RQLVYRTGGP PLASHLYTEA MLREAFAEMD 
LLTLREYDAE VAEGTGHRGR SALIGLVARR RQ