| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1201 |
|---|
| Symbol | |
|---|
| ID | 6160968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1287888 |
|---|
| End bp | 1289591 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641663955 |
|---|
| Product | putative succinate dehydrogenase |
|---|
| Protein accession | YP_001790235 |
|---|
| Protein GI | 171057886 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGC TCGAATGTGA CGTGATCGTC GTCGGCTCCG GCGCTGCGGG ATTGGCCGCC
GCGATCACCG CGCGCAAGCG TGGGCTCGAC GTGGTCGTGC TGGAGAAGGA ACCCGTGTTC
GGTGGCACCA CCGCGCTGTC CGGCGGCGTG TTGTGGATCC CGCTGAACAC GCATGGCCGC
AAGCAGAACC CGGCCGACAC GCGTGAGGCG GTGCGGACCT ACATGATGCG CGAGACCGGC
ACCTATTACG ACGCAGCCGC GGTCGACGCC TTTCTCGACA ACGGCCCGAA GATGGTCGAG
TTCTTCGAGC GCGAGACGGC GATGAAGTTC GTGCCGACGC TCTACCCGGA CTATCACCCG
ACGGTGGACG GTGGCGTCGA CATCGGCCGC TCGATCCTGG CAGCCCCGTA CGACATCCGC
GGTCTCGGCC GCGACATGGC GCGCCTGAAG CCGCCGCTCA AGACCATCAC CTTCATCGGC
ATGATGTTCA ACTCGTCGAA CGCCGATCTG AAGCATTTCT TCCAGGCGAC GAAATCGCTG
ACCTCCTTTG TCTACGTGGC CAAACGGCTG GTCACGCACA TCAAGGAGCT GGCGCTGTAC
CGGCGCGGCA TCCAGGTCAC GAGCGGCAAT GCGCTGGCCG CGCGGCTGGC GCAATCGGCG
CTGGACCTGG GCATCCCGAT CCTGACCAGC AGCCCGGCCA AGGAGATCCT GATCGAGCGT
GGCAAGGCCG TCGGCGTGCG CGTCGATGGT GAAGGCGGCG AGCGCCGCAT CACCGCGCGT
CATGGCGTGG TGCTGGCCTG CGGCGGCTTT CCGCACGACA TCCAGCGCAT TGCCAAGGCC
TACCCGCACC TGGCGCGTGG CGGCGAACAT CTGTCGCCCA CGCCGACGAG CAACACCGGC
GATGGCCTCA ACATGGCCGA GGCGCAGGGC GCGGCGGTCG ACATCCGCTT CAAGGACACC
TCGGCCTGGA TGCCGGTGTC GAAGGTGGTC TACGGCAACG GCGAGGTGGG CGTGTTCCCG
CACCTGCTCG ATCGCTACAA GCCCGGCATC ATCGGCGTGC TGGCGAATGG CAAACGTTTC
ACCAATGAAT CGGACTCGTA TCACGACGTC GGCGCCGCGC TGATCCGCGC CTGCGAAGGT
CAGAAGAACA CCGCCATGTG GCTCGTGTGC GACAAGCCGA CGCTGGCCAA GTACGGCCTC
GGTTTCGTCA AGCCGGCGCC GATGCCGATC GGCAAATTTT TGCGCAACGG CTACCTGATC
CAGGGCGACA CGCTGGCCGA GCTGGCGAAG AACGCCGGCA TCGATCCGGC CGGGCTCGAA
GCCACGGTGC GCACCTACAA CGTCGGCGCG GTCAAGGGTC AGGACCCGGC TTTCGGCCGC
GGCACGACCT CGTTCAACCG CTACCTGGCC GATCCGCAGA ACCAGCCCAA CCCCTGCGTG
GCGCCGGTGC AGAGCGGGCC GTTCTACGCG GTGAAGGTGA TCATGGGCGA CCTCGGCACC
TTCGACGGCA TCCGCACCAG CGTGGTCGGC GAGGTGCTCA AGCGCGACGG CTCGCCGATC
GCCGGTCTCT ACGCGGTGGG CAACGACCGC GCCAGCATCA TGGGCGGCAA CTACCCCGGC
GCCGGCATCA CGCACGGGCC GAACATGACC TTCGGCTACG TCACGGCCAA CCACATCGCC
GACCAGGCCG GGAGCCGGGC ATGA
|
|---|
| Protein sequence | MNKLECDVIV VGSGAAGLAA AITARKRGLD VVVLEKEPVF GGTTALSGGV LWIPLNTHGR
KQNPADTREA VRTYMMRETG TYYDAAAVDA FLDNGPKMVE FFERETAMKF VPTLYPDYHP
TVDGGVDIGR SILAAPYDIR GLGRDMARLK PPLKTITFIG MMFNSSNADL KHFFQATKSL
TSFVYVAKRL VTHIKELALY RRGIQVTSGN ALAARLAQSA LDLGIPILTS SPAKEILIER
GKAVGVRVDG EGGERRITAR HGVVLACGGF PHDIQRIAKA YPHLARGGEH LSPTPTSNTG
DGLNMAEAQG AAVDIRFKDT SAWMPVSKVV YGNGEVGVFP HLLDRYKPGI IGVLANGKRF
TNESDSYHDV GAALIRACEG QKNTAMWLVC DKPTLAKYGL GFVKPAPMPI GKFLRNGYLI
QGDTLAELAK NAGIDPAGLE ATVRTYNVGA VKGQDPAFGR GTTSFNRYLA DPQNQPNPCV
APVQSGPFYA VKVIMGDLGT FDGIRTSVVG EVLKRDGSPI AGLYAVGNDR ASIMGGNYPG
AGITHGPNMT FGYVTANHIA DQAGSRA
|
|---|
| |