| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1054 |
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| Symbol | |
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| ID | 6163132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1123329 |
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| End bp | 1125077 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663808 |
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| Product | putative signal transduction protein |
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| Protein accession | YP_001790088 |
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| Protein GI | 171057739 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1639] Predicted signal transduction protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCAA CCGCCAGCCC CGCCCCGTCG CCCGCAGCCG ATCCCGCCCC GACCGAAGCC
GCGGCGCCGC TCAGCGCCGA GGAACAGGCC GCGCAGGACG CCGCGGCCTG CGCCCAGGCC
GAACACGACG CCGCCGCCGT CGAGGCGGCC GAGCGCGAGG CGCAGCTCCA GCGCCTGCTG
CAGCGCATGC AGAAATCGGC CGATTTCCCG TCGCTGAAGG ACTCGATCCG CAGCATCCAG
AAGGTCTCGC GCTCGGAGAC CGCCCACCTG CGCGCGCTGA CCGACGAGGT GCTGGGCGAC
GTGGCACTGA CCAACAAGCT GCTGCGGCTG ATCAACACCG CCTTCTACAG CTCGGTGGGC
GGTGGTGGCA TCACCAGCAT CAAGCGGGCG GTGGCGCTGA TGGGCTTCCA GTCGATCGGC
ATGCTCGCGG CCTCGCTGAC GCTGTTCGAC AAGCTGCCCA AGGGGCCGGA CGGCGAACGC
GTGCGGGCCG AGTTCCGCCG CGCGCTGCTG GCCGCGATGC TGGCCAGCGA GCTCTGCCCG
ACCCACAAGC TGCAGGAAAA CGCCTACCTC GCCGCGCTGT TCCAGAACCT CGGCCCGATG
CTGGCGTGGA TGCATTTCCG CGACGAGGCC ACCCAGATCG AGGCCCAGCT CGCCGAAGCC
GGCACGCCGG TCGACGGCAG CGACCACGCG GCGCTGCAGA AGACCTCGCG CGACGTGCTC
GGCATGGGCT ACGAGGACCT GGGCGTCGAA GTGGCCGGCC AGTGGGGCTG GCCGGAAGAC
CTGCAGCTGG CCCTGCGCCG GCTCGAACCG CGCGACCCGG AACAGCCGGT CGGCCACGAC
GAACGGCTGC GGGTGGCCTG CACCGCCGCC AATCACCTGG CCCGCCAGAT GCTGGAGATC
GAGGATCCGC AGGCGCTGGA AGCCTGCCTG GCCCGGTTCA CCGAGGCTTA CGGCGTCCCG
CTCGGCCTGG ACGTGGAGCA CCTGACGCCG ATCGTCGAAC GCTCCCGCCA GCAATGGGCC
GATCTGGCCG TGATGCTCGG CATGTCGGTG CCCGGCATCG CCAAGGCCGG CGCGAACAAC
AAGGTCGGCG GTGCCGCTCC CGCGTCGAAG ACGCCGGCCC GGCCCGGCGC TGCAGCCCCG
GTCAAGCCCG CCGCGGGCGG CCCGGCCCAG TCGCCGCAGC CGGTCAGGCC ACCGGCCCCG
ATGCGCCCGC GTGCGCCGGT GCCGGCGGCG GTCGGCGCGG CCCTGTCGGT GGCGCTGGAG
GCGATCAGCC AGCGGGCGAT GTCCGATGCG CCGCTGGGCG AGGTGCTGCA GTTCGTGATG
GCCCAGCTGC AGCAGTCGCT GCAACTGCAG CGGGTGGTGG TCTGCCTGCG CGACAGCGCC
AGCGGCGAAC TGCGCGGGCG CCTGGGCAGC GGGGACCGCG CCATGCAGCT GGCGCCGATG
TTCCGTGTGC CGATGCGCCC GCCGGGCGAT CTGTTCGGCC TGCTGTGCAC CAAGGGCGCC
GACACCCTGA TCTCGGACGC CAGCGACGCC TTGATCGCGA GAAGCCTGCC GGGCTGGTTT
CATCAGCAGG TCAAGGCACC GACCTTCCTG CTGCTGCCGC TGACGCTCGG CCAGCAGCCG
CTGGGCCTGA TCTACGGCGA CCGCGCCCAT GCCAACAGCC TGCAGGTGGG CGACGCCGAA
CTGACGCTGC TCAAGGCGAT GCGAAATCAG CTCGTCATGG CCATGCGTTT GCGGGGTGCG
GCGGCATGA
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| Protein sequence | MSATASPAPS PAADPAPTEA AAPLSAEEQA AQDAAACAQA EHDAAAVEAA EREAQLQRLL
QRMQKSADFP SLKDSIRSIQ KVSRSETAHL RALTDEVLGD VALTNKLLRL INTAFYSSVG
GGGITSIKRA VALMGFQSIG MLAASLTLFD KLPKGPDGER VRAEFRRALL AAMLASELCP
THKLQENAYL AALFQNLGPM LAWMHFRDEA TQIEAQLAEA GTPVDGSDHA ALQKTSRDVL
GMGYEDLGVE VAGQWGWPED LQLALRRLEP RDPEQPVGHD ERLRVACTAA NHLARQMLEI
EDPQALEACL ARFTEAYGVP LGLDVEHLTP IVERSRQQWA DLAVMLGMSV PGIAKAGANN
KVGGAAPASK TPARPGAAAP VKPAAGGPAQ SPQPVRPPAP MRPRAPVPAA VGAALSVALE
AISQRAMSDA PLGEVLQFVM AQLQQSLQLQ RVVVCLRDSA SGELRGRLGS GDRAMQLAPM
FRVPMRPPGD LFGLLCTKGA DTLISDASDA LIARSLPGWF HQQVKAPTFL LLPLTLGQQP
LGLIYGDRAH ANSLQVGDAE LTLLKAMRNQ LVMAMRLRGA AA
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