Gene Lcho_1043 details

Gene Information

• Locus tag: Lcho_1043
• Symbol: hscA
• ID: 6163598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1112680
• End bp: 1114545
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641663797
• Product: chaperone protein HscA
• Protein accession: YP_001790077
• Protein GI: 171057728
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 79
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCACTCC TGCAGATCTC CGAGCCCGGC CAGACGCCGG ACCCCCACCA GCGCCGCATC 
GCGGTCGGCA TCGACCTGGG CACCACGCAC TCGCTGGTGG CCGCGGTGCG CCACGGCGTT 
CCAGAATGCC TGCCCGACGA GCAGGGCCGC GTCATCCTGC CGTCGGCCGT GCGTTATCTC 
GATGGCCAGA AACGCCAGAT CGGCGCGCAG GCGCTGGCCG CGCAGGCCGA GGATCCGCAC 
AACACGCTGG TGTCGGTGAA GCGCTTCATG GGCCGCGCAC TGGCCGACAT CGCCGATCAC 
GACCATCTGC CGTATCACTT CATCGACCAG CCCGGCATGG TGGCGATCGA GACCCGCGCG 
GGCATCAAGT CGCCGGTGGA AGTGTCGGCC GAGATCCTTG CCAGCCTGCG CCAGCGTGCC 
GAGGACAGCT TCGACGCCGA TCTGTTCGGC GCGGTCGTCA CGGTGCCGGC CTATTTCGAC 
GACGCCCAGC GCCAGGCCAC CAAGGACGCG GCGCAGCTCG CCGGCATCAA CGTGCTGCGT 
CTGCTCAACG AGCCCACCGC CGCGGCCATC GCCTACGGCC TGGACAACGC CGTCGAAGGC 
CTTTACGCGG TGTTCGACCT GGGTGGTGGC ACTTTCGACA TCTCGTTGCT GCGGCTCTCG 
AAGGGCGTGT TCGAGGTGGT GGCCGTGGGC GGCGATTCGG CCCTCGGCGG CGACGACTAC 
GACGCCCGCC TGGCCGCGCT GCTGCTGCAG CGCGCCGGCC TCGGCTCGCT CGACGGCTTG 
AGCGCGCACG ACAAGCGCGG TGTGCTGACG CAGGCGCGCC ACGCCAAGGA GCAGCTCACC 
TCGACGGACA GCACCCGCGT CGAACTGAGC CTGTCGTCCG GCGTCGTGAT GCTCGACGTC 
CAGCGCAGCG ATTTCGACGC CGCCACCGCC GACCTCACCG CCCGCACCCT CACGCTGATG 
AAACGCGTGC TGCGCGACGC CAAGGTGCGC GCCGACGAAG TCCAGGGCAC GGTGATGGTG 
GGCGGCTCGA CCCGCATGCC GGCGGTGCGC GCGGCGGTGG CAGCGTTCTG CGGTCGCGAG 
CCGCTGATCA ACCTGAATCC GGACGAGGTG GTTGCGCTCG GCGCAGCCGT GCAGGCCAAC 
GCCCTGGCCG GCAACGACAG CGGTGGCGAA TTGCTGCTGC TCGATGTCAC GCCGCTGTCG 
CTCGGCCTCG AGACCATGGG CGGCCTGGTC GAGCGCATCA TCGAACGCAA CTCGACCATC 
CCGACCGCCA AGGCGCAGGA TTTCACCACC TACAAGGACG GCCAGACCGC GATTGCCGTC 
CACGTCATCC AGGGCGAGCG CGAGCTGGTG GCCGACTGCC GTTCGCTGGC GCGCTTCGAG 
CTGCGCGGCA TTCCGCCGAT GGTGGCCGGT GCGGCGCGCA TCCGCGTCAC CTTCCAGGTC 
GATGCCGATG GGCTGCTGTC GGTGACAGCC AAGGAGCAGA TCTCGGGCGT CGAAGCGGCC 
ATCGTCGTCA AGCCCAGCTA CGGCCTGACC GATGACCAGG TCGCCGGCAT GCTGCGCGAC 
GGTTTTGCCC AGGCCGAGGG CGACATCACC CGCCGCGCCC TGAACGAGGC CCGCGTCGAA 
GCCGAGCGTC TGGCCCTGGC GACCGACGCG GCGTTGTCTG CCGACGGCGA CCTGCTCGAC 
GCCGACGAAT ACGCCGACAT CCAGCGTCTG GTGCAAGACA TTCGCACCAG CGTCCAAGGT 
GACGACACAC GCGCCATCGA GGCCGCGACC GAAGCGCTGG CCCACGGCAC CGAATCGTTT 
GCGGCCGAAC GAATGAACCG CGGCATCCGT CAAGCCCTGA CCGGTCGCCG TCTCGACGAA 
ATCTGA 

 

Protein sequence

MALLQISEPG QTPDPHQRRI AVGIDLGTTH SLVAAVRHGV PECLPDEQGR VILPSAVRYL 
DGQKRQIGAQ ALAAQAEDPH NTLVSVKRFM GRALADIADH DHLPYHFIDQ PGMVAIETRA 
GIKSPVEVSA EILASLRQRA EDSFDADLFG AVVTVPAYFD DAQRQATKDA AQLAGINVLR 
LLNEPTAAAI AYGLDNAVEG LYAVFDLGGG TFDISLLRLS KGVFEVVAVG GDSALGGDDY 
DARLAALLLQ RAGLGSLDGL SAHDKRGVLT QARHAKEQLT STDSTRVELS LSSGVVMLDV 
QRSDFDAATA DLTARTLTLM KRVLRDAKVR ADEVQGTVMV GGSTRMPAVR AAVAAFCGRE 
PLINLNPDEV VALGAAVQAN ALAGNDSGGE LLLLDVTPLS LGLETMGGLV ERIIERNSTI 
PTAKAQDFTT YKDGQTAIAV HVIQGERELV ADCRSLARFE LRGIPPMVAG AARIRVTFQV 
DADGLLSVTA KEQISGVEAA IVVKPSYGLT DDQVAGMLRD GFAQAEGDIT RRALNEARVE 
AERLALATDA ALSADGDLLD ADEYADIQRL VQDIRTSVQG DDTRAIEAAT EALAHGTESF 
AAERMNRGIR QALTGRRLDE I