| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0987 |
|---|
| Symbol | |
|---|
| ID | 6162178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1054189 |
|---|
| End bp | 1055982 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663737 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001790023 |
|---|
| Protein GI | 171057674 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCT ACACCCCCCC GCTCGAAGAC TGGCGTTTCG TGATCGAACA GGTGCTTGAT
GCACCAGCCT CGTGGCGCGC GCAGCCGGCG TTTGCCGATC TGGATGCCGA GACCGCGGCC
GAGGTGCTGG CACAAGGCGG GCGCTTCGCC GCCGAGGTGA TCGCGCCGCT GAACGGCCCG
GGCGATCGGC AAGGTTGCCG CTGGAGCCCC GACGACGGCG GCACGGTGCG CACGCCCGAC
GGTTATCCGG CCGCCTGGCA AGCGTTTGTC GACGGCGGCT GGCCGGCGCT GGCGTGTGAC
CCGGCGGTCG GCGGCCAGGG CCTGCCGCAG CTGCTGAATG CGGCGCTGTT CGAGATGCTC
ATCGCCGCCA ACCACGCCTG GACGATGTAC CCCGGCCTGC TGCACGGCGC CTACGAGGCG
ATCAAGGCGA CCGCGACACC CGAGCTGCGC GAGCGTTATC TGTCGAAAGT GGTCAGCGGC
GAGTGGCTGG CGACGATGAA CCTGACCGAG CCGCAGGCCG GCAGCGACCT GGGCCTGATC
CGCAGCAAGG CCGAGCCGCT CGACGGCACG CTGACCAGCG GCTCGCGCGT GGCGGTGAGC
GGCAACAAGA TCTTCATCTC CGGCGGCGAT CAGGACATGA CCGCCAACAT CGTGCACCTG
GTGCTGGCCC GCCTGCCCGA TGCACCGGCC GGCACCAAGG GCCTGAGCCT GATCCTGGTA
CCCAAGTTCC TGCCCGACGG CACGCGCAAC GCGGCCTGGT GCGACGGCAT CGAACACAAG
ATGGGCATCC ACGGCAGCTC GACCAGCCAG ATGCGCTTCG AGCGCGCCAC CGGCTGGCTG
CTCGGCGAGC CGGGCACGGG GCTCGCGGCG ATGTTCCTGA TGATGAATTC GGCCCGGCTG
CACGTGGCGA TGCAGGGGCT GGCGCACCTC GAAGGCGCGA CGCAGAAGGC GCTGGCCTAC
GCGCAGGAAC GCGTGCAGTT GCGCGCACCC GGCCGGCCGG CCGATGCCAT GCCATCCGGT
GGAGCGAGCG GCGGGCCGGA CCCGATCGTC TGGCACCCGG CCATGCGCCG CATCCTGCTG
ACGCTGCAGG CGCAGACCGA AGGCGCGCGC GTGCTGGCCG GCTGGATCGG CCTGCTGCTC
GATGAATCCG AACAGCACCC CGAGCCCGCG CAGCGCGCGC GCGCCGCCGA TCTGGTGGCG
CTGCTGACGC CGGTCGCCAA GGCGTTTCTG ACCGATCTCG GCCACCGCGG CGCCGACGAT
GCGCTGGGCG TGTTCGGCGG TTACGGCTAC GTGCACGAAT ACGGCATCGA GCAGCAGGTG
CGCGACAGCC GCATCGCGAT GATCTACGAG GGCACGAATC AGATCCAGGC GATCGACCTG
GTGATGCGCA AGTGGCTCGA CACGCCGCGG CGCATCGAGG CGCTGCTCGA CGAGATGGAA
GCCGAGGCAG CCGCCTGCGA GGCGCGCGCG GATCTGGCGA TCGAGGCCGC CGCCTTGCGC
GAGCAGATCG CCGCGATCCG CCTGGCCGGC ATCGACCTGC ACGCCGCCCG CGCCCACGAC
GCGCAGGCCG TGCTGGCGGT CGCCGACGAC GCGCTGCACG GCCTCGGCCA CGCGCTGCTG
GCCTGGGCCT GGGCGCGCAT GGCGCGCTGC GCCGAGCGCC ACCCCGACCC ACGCGCGGCG
CAGCGCAAGC GCGAGCTGTC GCGCTTTGGC CTCACCTGGC TGATGGACGA TCAAGCCGGA
CGCTGGATGC GGCTGCGCCA GTGGCAGCGG CCGCTGCCCT GGGTGTTAGC CTGA
|
|---|
| Protein sequence | MTTYTPPLED WRFVIEQVLD APASWRAQPA FADLDAETAA EVLAQGGRFA AEVIAPLNGP
GDRQGCRWSP DDGGTVRTPD GYPAAWQAFV DGGWPALACD PAVGGQGLPQ LLNAALFEML
IAANHAWTMY PGLLHGAYEA IKATATPELR ERYLSKVVSG EWLATMNLTE PQAGSDLGLI
RSKAEPLDGT LTSGSRVAVS GNKIFISGGD QDMTANIVHL VLARLPDAPA GTKGLSLILV
PKFLPDGTRN AAWCDGIEHK MGIHGSSTSQ MRFERATGWL LGEPGTGLAA MFLMMNSARL
HVAMQGLAHL EGATQKALAY AQERVQLRAP GRPADAMPSG GASGGPDPIV WHPAMRRILL
TLQAQTEGAR VLAGWIGLLL DESEQHPEPA QRARAADLVA LLTPVAKAFL TDLGHRGADD
ALGVFGGYGY VHEYGIEQQV RDSRIAMIYE GTNQIQAIDL VMRKWLDTPR RIEALLDEME
AEAAACEARA DLAIEAAALR EQIAAIRLAG IDLHAARAHD AQAVLAVADD ALHGLGHALL
AWAWARMARC AERHPDPRAA QRKRELSRFG LTWLMDDQAG RWMRLRQWQR PLPWVLA
|
|---|
| |