| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0893 |
|---|
| Symbol | |
|---|
| ID | 6162613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 955998 |
|---|
| End bp | 957638 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663643 |
|---|
| Product | Glycerone kinase |
|---|
| Protein accession | YP_001789930 |
|---|
| Protein GI | 171057581 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2376] Dihydroxyacetone kinase |
|---|
| TIGRFAM ID | [TIGR02361] dihydroxyacetone kinase, ATP-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGT CCCAGTTCAT CAACGCCCGC GAAGACATCG TCGTCGAGGC GATCGAAGGT
CTCGTGCGCA TCTCGGGTGG CCGGCTGGCC CGGCTCGACG GCTTCCCGGA CATCAAGGTC
GTGGTCCGTT CGGACTGGGA CCGCAGTCGC GTCGCGCTGG TCTCCGGTGG TGGCTCAGGC
CATGAGCCTG CCCACGCCGG CTTCGTTGGC CGAGGCATGC TGACGGCCGC GGTCTGCGGC
GAGGTCTTCG CCTCGCCGTC GGTCGACGCG GTGCTGGCGG GCATCCTGGC CGTCACCGGC
GAGGCCGGCT GCCTGCTCAT CGTCAAGAAC TACACCGGCG ACCGGCTCAA CTTCGGCCTG
GCCGCCGAGC GTGCCCGTGT GCTGGGCAAG CGGGTCAGCT TGGTCGTGGT CGACGACGAC
ATCGCGCTGC CCGAGTTGCC GCAGGCCCGC GGCCTGGCCG GCACGCTGTT CGTGCACAAG
ATCGCCGGTG CGCTCGCCGA GCAGGGCGCC GACCTGGCCA GCGTGACCGA GGCGGCGCAG
CGCGTCATCG CGGGCACGGT CAGCATCGGC ATGTCGCTGG ACACCTGCCG CGTGCCGGGT
TCGGAGAAGG AGGAGCGCAT CCCCGCCGGC AAGGCCGAAC TGGGGCTAGG CCTCCACGGC
GAACCCGGCG TCGAGCAGGT CGAGCATGTC CATGCGCGCG GCGCGATCGA AGCCATGCTG
GCCCGACTGC TGCCGCATGT GCAGGCCGGC CCGCAGATCC TGCTGCTGAA CAACCTCGGC
GGCACCTCGG CGCTGGAGAT GGCCGTGCTG GCCCACGAGA TCACCCGTTC CGAGCTGGGT
CATCGGGTGA GCCACCTGGT CGGTCCGGCG GCGCTGATGA CCTCGCTGGA CATGCGCGGC
TTCTCGCTGT CGCTGCTGCC GGCTTGCGCT GCTGACCTGC AGGCGCTGGC CCGGCCGGTC
GATGTCATGG CCTGGCCCGG CGTGTCGGCG GTCGTGCCGG GTCGCACGGT CCCGATGCCC
GAGGGCCTGC AGCTGCCGGT GCCGACCCCT TCGGAGAACG GCGCGGTGCG GGCCGTGATC
GACCAGGTCT GTGACGCTCT GGTCCGTGCG ACGTCCGATC TCAACGCGCT GGACGCGAAG
TCCGGCGATG GCGATACCGG CTCGACGCTG GGCGGCGCCG CGCGGCGGAT CGCCGCCGAC
ATCGACCGTC TGCCGCTGGA CGACCTGCCG GCCCTGCTGG GCAGCATCGG CATGACGCTG
TCGCAGGTGA TGGGCGGCTC CTCGGGCGTG CTGCTGGCGA TCTTCTTCGC AGCGGCTGGC
GATGCCGCCC GGCAGGGCGC CGGCCTGCAG AAGTCGCTCC AGGCCGGTCT GGCACGCCTG
CAGCAGATCG GTGGAGCCCG TCTGGGCGAC CGCACGATGG TCGATGCGCT GGCCCCGGCC
TTGGCGGTGC TGGGCTCTGG CGTCGATGTC GCGGCGGTTG CAGCGAGACA AGGGGCCGCA
GCGACCGCTG CGATGAGCCG GGCCCGGTCG GGTCGAGCGA GCTATGTCAG CGCCGATCGT
CTGGTCGGTC ACGTCGACCC GGGTGCCGAA GCGGTGGCCC GTGTTTTCGA GGCCCTGGTT
CCTCGTTCGT TTGGACTCTG A
|
|---|
| Protein sequence | MSQSQFINAR EDIVVEAIEG LVRISGGRLA RLDGFPDIKV VVRSDWDRSR VALVSGGGSG
HEPAHAGFVG RGMLTAAVCG EVFASPSVDA VLAGILAVTG EAGCLLIVKN YTGDRLNFGL
AAERARVLGK RVSLVVVDDD IALPELPQAR GLAGTLFVHK IAGALAEQGA DLASVTEAAQ
RVIAGTVSIG MSLDTCRVPG SEKEERIPAG KAELGLGLHG EPGVEQVEHV HARGAIEAML
ARLLPHVQAG PQILLLNNLG GTSALEMAVL AHEITRSELG HRVSHLVGPA ALMTSLDMRG
FSLSLLPACA ADLQALARPV DVMAWPGVSA VVPGRTVPMP EGLQLPVPTP SENGAVRAVI
DQVCDALVRA TSDLNALDAK SGDGDTGSTL GGAARRIAAD IDRLPLDDLP ALLGSIGMTL
SQVMGGSSGV LLAIFFAAAG DAARQGAGLQ KSLQAGLARL QQIGGARLGD RTMVDALAPA
LAVLGSGVDV AAVAARQGAA ATAAMSRARS GRASYVSADR LVGHVDPGAE AVARVFEALV
PRSFGL
|
|---|
| |