| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0835 |
|---|
| Symbol | |
|---|
| ID | 6161491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 895531 |
|---|
| End bp | 896454 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663585 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001789872 |
|---|
| Protein GI | 171057523 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 90 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGTT GGTCGCAGAT CGAGTTCTTC GTTCAGGTGG CCGAACTCGG CAGCCTGTCG
CGTGCCGCCG AGAAGCTCGA CATGTCGAAC GCTGCGGCCA GCCGCACCCT GGTGGCCCTG
GAGGAGCGGC TGGGCGCGCG ACTGGTCGAG CGCACCACCC GGCGGTTGTG GCTCACCGAG
GCGGGCCAGG CGTTCCACCG GCGGTGCGTC GCCATGCTGG CCGAGATGGC CGAGGCCGAG
GCCGCCGTGC TCGAAACCAC CTTGCAGCCG ACCGGCCTGC TGCGCGTCAC CAGTTCGGTG
TCCTTCGCGA TGCTGCACAT CGCGCCTGGA CTGCCCGAGT TCAGCCGCCG CTATCCGAAG
CTGAACGTGC AGATCGTCGC GGCCAACCGC TACCCCGACT TCATCGAGGC CGGCATCGAC
GTGGCGATCC GCACCCGCGA GGTCGAGGGC GACTCGGGCA TCACCGTGCG ACGGCTCGCG
CACACCCGAC GCGTGCTGGC CGGCGCGCCC GGCTACTTCG CCGTTCACGG CACGCCCAGG
ACGCCCGACG ACCTCAAGCA GCACCGCCTG CTGGTCTACA ACCTGGCCAA GGATCCGAAC
GTGCTGCACT TCAGCCGTGG CGACGAGCGC TGCGACACCT CGATCACCAG CATGCTGGAC
TCCAACGAGG GCCAGGTGAT CTGCTCGGCC GGGCTTGCGG GTCTGGGCAT CGTGATCCAG
CCGCTCTACA TCATTCACGA CGAGATCGTG GCCGGGCGGC TGGTGCCGGT GCTGACCGAC
TGGGAGCTGC CGCCGCTGAC CATCAACCTG GCCTACCAGA GCCGGCGTCA CCAGCCGGCC
AAGATCCGGG TGTTCAACGA TTTCCTGGTC GAGCGCTTCG AAGCGCTCGA ACTTGAAAAG
AAATGGGCCG CGCCGCTGCG CTGA
|
|---|
| Protein sequence | MDRWSQIEFF VQVAELGSLS RAAEKLDMSN AAASRTLVAL EERLGARLVE RTTRRLWLTE
AGQAFHRRCV AMLAEMAEAE AAVLETTLQP TGLLRVTSSV SFAMLHIAPG LPEFSRRYPK
LNVQIVAANR YPDFIEAGID VAIRTREVEG DSGITVRRLA HTRRVLAGAP GYFAVHGTPR
TPDDLKQHRL LVYNLAKDPN VLHFSRGDER CDTSITSMLD SNEGQVICSA GLAGLGIVIQ
PLYIIHDEIV AGRLVPVLTD WELPPLTINL AYQSRRHQPA KIRVFNDFLV ERFEALELEK
KWAAPLR
|
|---|
| |