Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0776 |
Symbol | |
ID | 6163976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 838832 |
End bp | 839833 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663527 |
Product | integrase family protein |
Protein accession | YP_001789814 |
Protein GI | 171057465 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00000000202923 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCGCCG CGTCGTCGGC GAGCATCGAC CTCACCGCCA AGGTCGAGCA ATACCTGGCT GAACGCCGGC GCCTCGGGTT CAAGCCGTGC TCTTCCGATC TCGCCGTGCG CCATTTCACC CGCTTCATGG CCAGCGAGGA TCAGCGCGGC GCGTTGACGG TGGACGTGAT GGTCCGGTGG GCGCGCCAAG TGCAGCCCCG GTATCTCGTG GACGGCCAGG CCAATGTCGA CACCGCAGCG CGCCGACTGG CAACGCTGCG CCCCTTCATG CGTTGGCTGC AGCAGTTCGA TCCGACCGTC GAAGTGCCGG ACGACTCCAG CTTCGGCCCG ATCCCGCGCC GCGTGGCGCC GCATATCTAC AGCGAAGCCG AGATCGCTGC GCTAATCGTC GCGGCTCGCC GACTCGGTCC TTCGGATGGC CTTCGTGCCG CCACCTACGC GACGCTGTTC GGCCTGATCG CATCGGCCGG ACTTCGAGTC TCCGAAGCGA TCAACCTGGC CGACTCGGAT GCGGATCTGG AGGGCCGTGT CCTGACCATC CAGCAGACCA AGTTTGGCAA GTCGCGCATG GTGCCACTGC ACCCCAGCGT GATTGGCCCG CTGGCCGCCT ACCGAGCCCT GCGCCGCCAG CACGTGCAAC CGAGGCCACA GATGACTTTC TTCGTCGGCT CGCGCGGCGT GCGCCGCGGC AAGCCGTTGG GAGACCGGCA GGTGCATCGG ATGTTCTGCC AGCTTCGCGA GCAGTTGGGC TGGATCGACC GCGGCGGCCA TGGCCGACCC CGGGTGCATG ACCTGCGCCA CAGCTTCGCC GTGAGGCGGA TGATCCTGTG GCACCAGCAG GGAGCGAACC TCGACCAACG CATGCTGGCC CTGTCCACGT ACATGGGCCA CATCAACATC TCCAGCACCT ACTGGTACCT GAGCGGCGTG CCGGAGTTGA TGGCGCTGGC CGGGGCTCGA TTCGAACGCT TCGCCGATAT CGCGGAGAGC GACGATGAGT AG
|
Protein sequence | MSAASSASID LTAKVEQYLA ERRRLGFKPC SSDLAVRHFT RFMASEDQRG ALTVDVMVRW ARQVQPRYLV DGQANVDTAA RRLATLRPFM RWLQQFDPTV EVPDDSSFGP IPRRVAPHIY SEAEIAALIV AARRLGPSDG LRAATYATLF GLIASAGLRV SEAINLADSD ADLEGRVLTI QQTKFGKSRM VPLHPSVIGP LAAYRALRRQ HVQPRPQMTF FVGSRGVRRG KPLGDRQVHR MFCQLREQLG WIDRGGHGRP RVHDLRHSFA VRRMILWHQQ GANLDQRMLA LSTYMGHINI SSTYWYLSGV PELMALAGAR FERFADIAES DDE
|
| |